View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745-Insertion-22 (Length: 297)
Name: NF4745-Insertion-22
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745-Insertion-22 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 18327864 - 18328010
Alignment:
| Q |
8 |
attgatactaacgcgccattcaacaacaaactgttgtttaccatctttactcttccaaacacgagctactcttactctctcttttccatgtctctgttcg |
107 |
Q |
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| T |
18327864 |
attgatactaacgcgccattcaacaacaaactgttgtttaccatctttactcttccaaacacgagctactcttactctctcttttccatgtctctgttcg |
18327963 |
T |
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| Q |
108 |
aattcgaatccttccacgttcttcgccatcgatcgtgcttttacctt |
154 |
Q |
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| T |
18327964 |
aattcgaatccttccacgttcttcgccatcgatcgtgcttttacctt |
18328010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 18328066 - 18328162
Alignment:
| Q |
201 |
ttaagttttctacgtcgttctaattctatttatactaaaagaatatgcgttttttaagtgtactttaagagttaggaggataaggacagttcagtat |
297 |
Q |
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| T |
18328066 |
ttaagttttctacgtcgttctaattctatttatagtaaaagaatatgagttttttaagtgtactttaagagttaggaggataaggacagttcagtat |
18328162 |
T |
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