View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4745-Insertion-25 (Length: 256)
Name: NF4745-Insertion-25
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745-Insertion-25 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 1268818 - 1268570
Alignment:
| Q |
8 |
gggtttattgtgcaatatcattcattcactaaatttacgtggctcttttcaagaacaatgcatgcatgacaaattttattcgtatgaatatttcttctgt |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1268818 |
gggtttattgtgcaatatcattaattcactaaatttacgtggctcttttcaagagcaatacatgcatgacaaattttattcgtatgaatatttcttctgt |
1268719 |
T |
|
| Q |
108 |
ccctctttaaatattgagagacaaaaggacttcaatgattgtgtactttgttacttgtttcttttggtgtttgaaacattgaacaaacaaaaagaataac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1268718 |
ccctctttaaatattgagagacaaaaggacttcaatgattgtgtactttgttacttgtttcttttggtgtttgaaacattgaacaaacaaaaagaataac |
1268619 |
T |
|
| Q |
208 |
aaataattaatccttttaactttaacgacatttaatttgtctactttgg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1268618 |
aaataattaatccttttaactttaacgacatttaatttgtctactttgg |
1268570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University