View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745-Insertion-3 (Length: 938)
Name: NF4745-Insertion-3
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 219 - 788
Target Start/End: Complemental strand, 45304483 - 45303940
Alignment:
| Q |
219 |
tcattcatcatcatgcatgtatgtactaaaccagacaaataccatctctttttcctttacaactttgggttgggacattcctcccttaatcaatcaccaa |
318 |
Q |
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| T |
45304483 |
tcattcatcatcatgcatgtatgtactaaaccagacaaataccatctctttttcctttacaactttgggttgggacattcctcccttaatcaatcaccaa |
45304384 |
T |
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| Q |
319 |
aaagtcttttaaggaataataatcataaggatccttacccacccactaagcactgattatatgcatnnnnnnnnnnnnnnnttagataactagtaaaaag |
418 |
Q |
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| T |
45304383 |
aaagtcttttaaggaataataatcataaggatctttatccacccactaagcactgattatatgcatagagagagaga----ttagataactagtaaaaag |
45304288 |
T |
|
| Q |
419 |
tagtaacttatatgcagtaatgcacaaagtaactaggtataggggaaagtaagaaaggaccatagtatagtaggtaagaaaagaaaagaaaaggtttcgt |
518 |
Q |
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| T |
45304287 |
tagtaacttatatgcagcaatgcacaaagtaactaggtataggggaaagtaagaaaggaccat-----agtaggt-----aagaaaagaaaaggtttcgt |
45304198 |
T |
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| Q |
519 |
tgtagtagtaatttgttgggaaatgaaaaggggtcctaaaagctgcattacttcctttctgtcgggggctgctgttatgaaacttagctgggcttttggg |
618 |
Q |
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| T |
45304197 |
tgtagtagtaatttgttgggaaatgaaaa-gggtcctaaaagctgcattccttcctttctgtc-ggggctgctgttatgaaacttagctgggcttttggg |
45304100 |
T |
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| Q |
619 |
gcttgtgcatattcattcaagtcaagtcagtagcttttgggcactcccccattccattattcttctttctatgaaatgaaatgaaattgagagaccacca |
718 |
Q |
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| T |
45304099 |
gcttgtgcatattcattcaagtcaagtcagtagcttttgggcactcccccattccattattcttctttct-----atgaaatgaaatttagagaccacca |
45304005 |
T |
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| Q |
719 |
aaacaaacaagacaaccctcaccttcacaccttttgctttaatttgacttcacatagaccaacatccacc |
788 |
Q |
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| T |
45304004 |
----aaacaagacaaccctcaccttcacacc-tttgctttaatttgacttcacatagaccaacatccacc |
45303940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 45304702 - 45304522
Alignment:
| Q |
10 |
tacatacatagatgacatgctttttctcattcttgttggttgagatgtaaagttatattcnnnnnnnnnnnnnnnnnngtcaacaggcgcaagtaggaca |
109 |
Q |
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| T |
45304702 |
tacatacatagatgacatgctttttctcattcttgttggttgagatgtaaagttatattcttttttgtttttctttttgtcaacaggcgcaagtaggaca |
45304603 |
T |
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| Q |
110 |
gtgtttgaagttgaacacactaaaaactggctaccatctacaaattccagtaccagtactcttcctcttgcagaggtctat |
190 |
Q |
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| T |
45304602 |
gtgtttgaagttgaacacactaaaaactggctaccatctacaaattccagtaccagtactcttcatcttgcagaggtctat |
45304522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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