View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4745-Insertion-4 (Length: 869)

Name: NF4745-Insertion-4
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4745-Insertion-4
NF4745-Insertion-4
[»] chr7 (1 HSPs)
chr7 (413-857)||(3367031-3367471)
[»] chr4 (4 HSPs)
chr4 (413-857)||(54187943-54188383)
chr4 (413-857)||(8570795-8571223)
chr4 (8-92)||(28462062-28462146)
chr4 (510-557)||(5992046-5992093)
[»] chr2 (1 HSPs)
chr2 (8-395)||(45402473-45402860)
[»] chr3 (3 HSPs)
chr3 (413-857)||(28696755-28697183)
chr3 (8-143)||(23362061-23362196)
chr3 (577-676)||(11493848-11493948)
[»] chr6 (2 HSPs)
chr6 (548-857)||(16720019-16720326)
chr6 (8-92)||(7600376-7600460)
[»] chr5 (3 HSPs)
chr5 (290-395)||(19611706-19611811)
chr5 (8-95)||(19611622-19611709)
chr5 (510-636)||(16450506-16450632)
[»] chr1 (1 HSPs)
chr1 (250-300)||(22557292-22557342)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 413 - 857
Target Start/End: Complemental strand, 3367471 - 3367031
Alignment:
413 tattgtgttttgtcatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt 512  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
3367471 tattgtgttttgt--tgtttaccatttaatctaccatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagatctgccaatgactt 3367374  T
513 caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3367373 caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 3367274  T
613 tggtccaatgctcatctttctttccaagttttttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 712  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3367273 tggtccaatgctcatctttctttccaagttttttacaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 3367174  T
713 tcactgtcttggtgtcgctaagccagtgaaatgaggacactgcattctttgtgaatcaatgcttgtctgagtcctttctgtcagggacttgttttgtagc 812  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
3367173 tcacagtcttggtgtcgctaagccagtgaaatga-gatactgcattctttgtgaatcaatgcttgtctgagtcctttctgccagggacttgttttgtagc 3367075  T
813 ctagagggtaccattcttcccttccttagactacaactgttatga 857  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
3367074 ctaga-ggtaccattcttcccttccttagactacaactgtcatga 3367031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 413 - 857
Target Start/End: Complemental strand, 54188383 - 54187943
Alignment:
413 tattgtgttttgtcatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt 512  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
54188383 tattgtgttttgt--tgtttaccatttaatctaccatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagatctgccaatgactt 54188286  T
513 caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 612  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
54188285 taagtgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 54188186  T
613 tggtccaatgctcatctttctttccaagttttttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 712  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
54188185 tggtccaatgctcatctttctttccaagttttttacaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 54188086  T
713 tcactgtcttggtgtcgctaagccagtgaaatgaggacactgcattctttgtgaatcaatgcttgtctgagtcctttctgtcagggacttgttttgtagc 812  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
54188085 tcacagtcttggtgtcgctaagccagtgaaatga-gatactgcattctttgtgaatcaatgcttgtctgagtcctttctgccagggacttgttttgtagc 54187987  T
813 ctagagggtaccattcttcccttccttagactacaactgttatga 857  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
54187986 ctaga-ggtaccattcttcccttccttagactacaactgtcatga 54187943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 413 - 857
Target Start/End: Original strand, 8570795 - 8571223
Alignment:
413 tattgtgttttgtcatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt 512  Q
    |||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||          |||||  |||||||||||    
8570795 tattgtgttttgt--tgtttaccatttaatctaccatattaggtggcttaatctttgtttttgaattatttg----------cagatctgccaatgactt 8570882  T
513 caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8570883 caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 8570982  T
613 tggtccaatgctcatctttctttccaagttttttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 712  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8570983 tggtccaatgctcatctttctttccaagttatttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 8571082  T
713 tcactgtcttggtgtcgctaagccagtgaaatgaggacactgcattctttgtgaatcaatgcttgtctgagtcctttctgtcagggacttgttttgtagc 812  Q
    |||  |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
8571083 tca--gtcttggtgtcgctaagccaatgaaatga-gatactgcattctttgtgaatcaatgcttgtttgagtcctttctgccagggacttgttttgtagc 8571179  T
813 ctagagggtaccattcttcccttccttagactacaactgttatga 857  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
8571180 ctaga-ggtaccattcttcccttccttagactacaactgtcatga 8571223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 28462146 - 28462062
Alignment:
8 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28462146 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt 28462062  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 557
Target Start/End: Original strand, 5992046 - 5992093
Alignment:
510 cttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatct 557  Q
    ||||||| |||||||||||||||||||||||| ||| |||| ||||||    
5992046 cttcaagtgtgattgatggcttgcaccaagatcggagcagtagcatct 5992093  T

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Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 45402473 - 45402860
Alignment:
8 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccacttt 107  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
45402473 gtttcttggcagaggaggtaaaataggtgaactagaaatttctcatattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccacatt 45402572  T
108 attagattattatatgcacgtagtctaatcgtaatacaccctactattttttatcataatgctacttacatacattacctggtctctatccttgcaacaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
45402573 attagattattatatgcacgtagtctaatcgtaatacaccctactattttttatcataatgctactcacaaacattacctggtctctatccttgcaacaa 45402672  T
208 aaatcatggatagagcctaaccagatattttataaccttacagtataatctacaaaatttgaagatattgtaagtaatttcatgtttcaagttcctatca 307  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
45402673 aaatcatggatagagcctaaccggatattttataaccttgcagtataatctacaaaatttgaagatattgtaagtgatttcatgtttcaagttcctatca 45402772  T
308 gtatgtttcaagtatatgtctaaagacttgctaaatttgatacaagcatagcatttgaaatagaatatagatgatgtcagcgagtaga 395  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
45402773 atatgtttcaagtatatgtctaaagacttgctaaatttgaaacaagcatagcatttgaaatagaatagagatgatgtcagcgagtaga 45402860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 413 - 857
Target Start/End: Original strand, 28696755 - 28697183
Alignment:
413 tattgtgttttgtcatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt 512  Q
    |||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||          |||||  |||||||||||    
28696755 tattgtgttttgt--tgtttaccatttaatctaccatattaggtggcttaatctttgtttttgaattatttg----------cagatctgccaatgactt 28696842  T
513 caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28696843 caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgca 28696942  T
613 tggtccaatgctcatctttctttccaagttttttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 712  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28696943 tggtccaatgctcatctttctttccaagttatttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatc 28697042  T
713 tcactgtcttggtgtcgctaagccagtgaaatgaggacactgcattctttgtgaatcaatgcttgtctgagtcctttctgtcagggacttgttttgtagc 812  Q
    |||  |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
28697043 tca--gtcttggtgtcgctaagccaatgaaatga-gatactgcattctttgtgaatcaatgcttgtttgagtcctttctgccagggacttgttttgtagc 28697139  T
813 ctagagggtaccattcttcccttccttagactacaactgttatga 857  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
28697140 ctaga-ggtaccattcttcccttccttagactacaactgtcatga 28697183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 23362061 - 23362196
Alignment:
8 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccacttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
23362061 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccacatt 23362160  T
108 attagattattatatgcacgtagtctaatcgtaata 143  Q
    ||||||||||||||||||||||||||||||||||||    
23362161 attagattattatatgcacgtagtctaatcgtaata 23362196  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 577 - 676
Target Start/End: Complemental strand, 11493948 - 11493848
Alignment:
577 tgattggttttaaaatgattccttttactatgtgcatggtccaa-tgctcatctttctttccaagttttttgcaaatattgcaaatgttaatgttccatt 675  Q
    ||||||| ||||| || || || ||||||| ||||||||||||| |||| ||||||||||| ||||||||    || |||||||| ||||| ||||||||    
11493948 tgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagttaacgttccatt 11493849  T
676 g 676  Q
    |    
11493848 g 11493848  T

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Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 548 - 857
Target Start/End: Original strand, 16720019 - 16720326
Alignment:
548 agtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgcatggtccaatgctcatctttctttccaagttttttg 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16720019 agtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgcatggtccaatgctcatctttctttccaagttttttg 16720118  T
648 caaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatctcactgtcttggtgtcgctaagccagtgaaatgag 747  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||     
16720119 caaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatctcatagtcttggtgtcgctaagccagtgaaatga- 16720217  T
748 gacactgcattctttgtgaatcaatgcttgtctgagtcctttctgtcagggacttgttttgtagcctagagggtaccattcttcccttccttagactaca 847  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
16720218 gatactgcattctttgtgaatcaatgcttgtctgagtcctttctgccagggacttgttttgtagcctaga-ggtaccattcttcccttccttagactaca 16720316  T
848 actgttatga 857  Q
    ||||| ||||    
16720317 actgtcatga 16720326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 7600376 - 7600460
Alignment:
8 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7600376 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt 7600460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 19611706 - 19611811
Alignment:
290 tgtttcaagttcctatcagtatgtttcaagtatatgtctaaagacttgctaaatttgatacaagcatagcatttgaaatagaatatagatgatgtcagcg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
19611706 tgtttcaagttcctatcagtatgtttcaagtatatgtctaaagacttgctaaatttgatacaagcatagcatttgaaatagaatagagatgatgtcaggg 19611805  T
390 agtaga 395  Q
    ||||||    
19611806 agtaga 19611811  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 19611622 - 19611709
Alignment:
8 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgtt 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19611622 gtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgtt 19611709  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 636
Target Start/End: Original strand, 16450506 - 16450632
Alignment:
510 cttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgt 609  Q
    ||||||| | ||||||| ||||||| ||||||||   |||||| |||| ||||||||| |||| ||||||| |||||||  || | ||||||||| | ||    
16450506 cttcaagtgggattgattgcttgcaacaagatggccgcagtggaatctaaggtataaatttcctctttgataggttttaggattactccttttacaacgt 16450605  T
610 gcatggtccaatgctcatctttctttc 636  Q
    ||||| || ||||||||||||||||||    
16450606 gcatgttctaatgctcatctttctttc 16450632  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 22557342 - 22557292
Alignment:
250 gtataatctacaaaatttgaagatattgtaagtaatttcatgtttcaagtt 300  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| |||||    
22557342 gtataatctacaaaatttgaagatattgtatgtaattttatgtttgaagtt 22557292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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