View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745-Insertion-5 (Length: 815)
Name: NF4745-Insertion-5
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745-Insertion-5 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 635; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 125 - 815
Target Start/End: Original strand, 11886925 - 11887620
Alignment:
| Q |
125 |
ttaatgtgtacatgaaatttacataccttgctcaatatctggatcggcttgtaaatctgagctataagttgcacccaatttattccaggcttctttagca |
224 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11886925 |
ttaatgtgtacataaaatttacataccttgctcaatatctggatcggcttgtaaatctgagctataagttgcacccaatttattccaggcttctttagca |
11887024 |
T |
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| Q |
225 |
atatgaagatctctaatatgagtaagattctctggtccacatgttagttgaatgatatgcaaagccttcccattcttcctgttccaaatctcatattcgg |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887025 |
atatgaagatctctaatatgagtaagattctctggtccacatgttagttgaatgatatgcaaagccttcccattcttcctgttccaaatctcatattcga |
11887124 |
T |
|
| Q |
325 |
tcttagaacgcgcaccaatttcaggaatagaggtcacaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagtt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887125 |
tcttagaacgcgcaccaatttcaggaatagaggtcacaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagtt |
11887224 |
T |
|
| Q |
425 |
gtctttggtcagtggttcaagaactattccactcgctgcaatgcttgttcctgtcattctactgcttcacaatctgtggtgcaaaaatatgtatgacata |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11887225 |
gtctttggtcagtggttcaagaactattccactcgctgcaatgcttgttcctgtcattctactgcttcacaatctgtggtgcaaaaatatgtatgatata |
11887324 |
T |
|
| Q |
525 |
at---tactaaatcattagacaaatatgtatataataaattgaaagacaaaatggaacaagagaaagtagcatagttggtacttaagaaagcaattatag |
621 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887325 |
attagtactaaatcattagacaaatatgtatataataaattgaaagacaaaatggaacaagagaaagtagcatagttggtacttaagaaagcaattatag |
11887424 |
T |
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| Q |
622 |
tgtcagtggacttgtaattagaaagaaaatattaaccttaaactttaagtttcgagtgtgtgagtgctcagtgtagttaagtcagaatactttgaaagaa |
721 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887425 |
tgtcagtggacttgtaattagaaagaaaatattaaccttaaactttaagtttcgagtgtgtgagtgctcagtgtagttaagtcagaatactttgaaagaa |
11887524 |
T |
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| Q |
722 |
acaaagggagcaaacgattggatttggaaggag--nnnnnnnnggacgttagagaaagcgtaaaacaatgcgcaagtgcaacgtgagaaaagttag |
815 |
Q |
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| T |
11887525 |
acaaagggagcaaacgattggatttggaaggagaaaaaaaataggacgttagagaaagcgtaaaacaatgcgcaagtgcaacgtgagaaaagttag |
11887620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 147 - 452
Target Start/End: Complemental strand, 11740278 - 11739970
Alignment:
| Q |
147 |
ataccttgctcaatatctggatcggcttgtaaatctgagctataagttgcacccaatttattccaggcttctttagcaatatgaagatctctaatatgag |
246 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||| || || ||||| |||||| |||||| |||| |||||||| ||||| || |
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| T |
11740278 |
ataccttgctcaatatctggatcagctgataaatctgagctataatgtgtactcaattcattccaagcttctctagcggattgaagatccttaataagat |
11740179 |
T |
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| Q |
247 |
taagattctctggtccacatgttagttgaatgatatgcaaagccttcccattcttcctgttccaaatctcatattc-ggtcttagaacgcgcacca---a |
342 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| | |||| ||| ||| |||| || | |||| |
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| T |
11740178 |
taatattctctggtccacatgctagttgaatgatatgcaaagctttcccattcctcctgttccagacctcagtttctcgtc-tagatcgtggaccagtgc |
11740080 |
T |
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| Q |
343 |
tttcaggaatagaggtcacaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttc |
442 |
Q |
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| |||| |||||| ||||||| ||||||||| | || || | ||||| ||||| |||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
11740079 |
tctcagaaatagaagtcacaaacccccacagatcttgccctaatagataatttctcaccagacagctccagtaatcatagttgtctttcgtcagtggttc |
11739980 |
T |
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| Q |
443 |
aagaactatt |
452 |
Q |
| |
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|| ||||||| |
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| T |
11739979 |
aaaaactatt |
11739970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 206 - 471
Target Start/End: Original strand, 11816411 - 11816676
Alignment:
| Q |
206 |
attccaggcttctttagcaatatgaagatctctaatatgagtaagattctctggtccacatgttagttgaatgatatgcaaagccttcccattcttcctg |
305 |
Q |
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|||||| || ||||||||| |||||| |||||||||||| | ||||||||||| |||||||| ||||||||| |||||||||||||| |||| | ||| |
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| T |
11816411 |
attccaagcatctttagcagtatgaaaatctctaatatgtgcaagattctctgatccacatgctagttgaataatatgcaaagccttagcattatcccta |
11816510 |
T |
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| Q |
306 |
ttccaaatctcatattcggtcttagaacgcgcaccaatttcaggaatagaggtcacaacaccccacagaccatgtcccacaagatagtttctaaccagac |
405 |
Q |
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| T |
11816511 |
ttccatgcttcaacttcttctttagatcccacacctattgtagaaacagaactcacaactccccacagatcatgccctgcaagatagtttctcaccaaac |
11816610 |
T |
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| Q |
406 |
agctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgcttg |
471 |
Q |
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||||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
11816611 |
agctccaattatcgtagttgtcttttgttagtggttcaagaactattccacttgctgcaatgcttg |
11816676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 206 - 471
Target Start/End: Original strand, 11841723 - 11841988
Alignment:
| Q |
206 |
attccaggcttctttagcaatatgaagatctctaatatgagtaagattctctggtccacatgttagttgaatgatatgcaaagccttcccattcttcctg |
305 |
Q |
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|||||| ||||| |||||| ||| || |||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||||| |||| |||| | || |
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| T |
11841723 |
attccaagcttccttagcactatcaaaatctctaatatgcgtaagattctctgatccgcatgctagttgaataatatgcaaaaccttagcattgaccttg |
11841822 |
T |
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| Q |
306 |
ttccaaatctcatattcggtcttagaacgcgcaccaatttcaggaatagaggtcacaacaccccacagaccatgtcccacaagatagtttctaaccagac |
405 |
Q |
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||||| || || ||||| | | |||| |||| || || ||| |||||||| ||||||||| |||| ||| ||||||||||||| |||| || |
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| T |
11841823 |
ttccatgcttccacctcttctttagatcccacacccattttagaaacagaagtcacaactccccacagatcatgcccctcaagatagtttctcaccaaac |
11841922 |
T |
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| Q |
406 |
agctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgcttg |
471 |
Q |
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|||||||||| |||||||||||||| || |||||||||||||||||| || | |||| |||||||| |
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| T |
11841923 |
agctccagttatcgtagttgtcttttgttagtggttcaagaactattgcatttgctgaaatgcttg |
11841988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 360 - 468
Target Start/End: Original strand, 11776573 - 11776681
Alignment:
| Q |
360 |
acaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcg |
459 |
Q |
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||||| ||||||||| |||| ||||||||||||||| | |||| |||||||||||| |||||||||||| | || ||||||||||||||||||||||| | |
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| T |
11776573 |
acaacgccccacagatcatgccccacaagatagtttttcaccaaacagctccagttatcgtagttgtctcttgttagtggttcaagaactattccactag |
11776672 |
T |
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| Q |
460 |
ctgcaatgc |
468 |
Q |
| |
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||||||||| |
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| T |
11776673 |
ctgcaatgc |
11776681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 11776460 - 11776537
Alignment:
| Q |
238 |
taatatgagtaagattctctggtccacatgttagttgaatgatatgcaaagccttcccattcttcctgttccaaatct |
315 |
Q |
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||||||| | ||||||||| | ||| |||| ||||||||| |||||||||||||||||||||||| | ||||| |||| |
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| T |
11776460 |
taatatgtgcaagattctcagatccgcatgctagttgaataatatgcaaagccttcccattcttcatcttccatatct |
11776537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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