View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745-Insertion-7 (Length: 800)
Name: NF4745-Insertion-7
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Original strand, 46901004 - 46901506
Alignment:
| Q |
8 |
gtattctgctaaacttgtcttgtcttgnnnnnnngattaatttaataatgtttaaggttgtgggacaatttgttgaaccgactccagttcaagttggtct |
107 |
Q |
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| T |
46901004 |
gtattctgctaaacttgtcttgtcttgtttttctgattaatttaataatgtttaaggttgtgggacaatttgttgaaccgactccagttcaagttggtct |
46901103 |
T |
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| Q |
108 |
aaccggtgcggttcgagagagtgcattaaccatcggagaggcactagaggcgacggcccacacggtgggtgacaagccggtggaacagagtgacgcctct |
207 |
Q |
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| T |
46901104 |
aaccggtgcggttcgagagagtgcattaaccatcggagaggcactagaggcgacggcccacacggtgggcgacaagccggtggaacagagtgacgcctct |
46901203 |
T |
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| Q |
208 |
gcgatacaagcggcggaggtgagagctacggggagtaatattataacaccgggaggtttggcttcaatggctcaatctgcagcagctttcaatgctgagt |
307 |
Q |
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| T |
46901204 |
gcgatacaagcggcggaggtgagagctacggggagtaatgttataacaccgggaggtttggcttcaatggctcaatctgcagcagctttcaatgctgagt |
46901303 |
T |
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| Q |
308 |
gtcaacgtgaggaggagaagattaagatgggagatgttctgaccggagcaacagcgaagctgccagctgataaggcggcgacaaggcaagatgctgctgg |
407 |
Q |
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| T |
46901304 |
gtcaacgtgaggaggagaagattaagatgggagatgttctgaccggagcaacagcgaagctgccagctgataaggcggcgacaaggcaagatgctgctgg |
46901403 |
T |
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| Q |
408 |
ggtggctagtgctgagatgaggaataatcctgatgctactgctactcctggtggtgtagctgcttctgttgctgcggctgctaggctcaatgaaaacgtg |
507 |
Q |
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| T |
46901404 |
ggtggctagtgctgagatgaggaataatcctgatgctactgctactcctggtggtgtagctgcttctgttgctgcggctgctaggctcaatgaaaacgtg |
46901503 |
T |
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| Q |
508 |
ggc |
510 |
Q |
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| T |
46901504 |
ggc |
46901506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 736 - 793
Target Start/End: Original strand, 46901929 - 46901985
Alignment:
| Q |
736 |
aaataaattcatcaagcaaatcttggaacaatcgctcccatgcagatattattgttct |
793 |
Q |
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| T |
46901929 |
aaataaattcatcaagcaaatcttg-aacaatcgctcccatgcagatattattgttct |
46901985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 670 - 721
Target Start/End: Original strand, 46901663 - 46901713
Alignment:
| Q |
670 |
tatgttgtgctcttaattgaaaatggtttttcacttgtcaattatatctata |
721 |
Q |
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| T |
46901663 |
tatgttgtgctcttgattgaaaatgg-ttttcacttgtcaattatatctata |
46901713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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