View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_16 (Length: 319)
Name: NF4745_high_16
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 23324812 - 23325117
Alignment:
| Q |
1 |
aatacaattccaatggacacaccaattggactagagattgcgaatgcaaaagcgtaggctgcgcatgatagtagaggtcgattaggaaccatcctaagga |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324812 |
aatacaattccaatggccacaccaattggactagagattgcaaatgcaaaagcgtaggctgcgcatgatagtagaggtcgattaggaaccatcctaagga |
23324911 |
T |
|
| Q |
101 |
gtgctatgcccatggcaatggctgcgaatattttgtgcaaacagattgtccataaagctttccatgcgtctgcttttgtcacggaaacaccaattgctaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324912 |
gtgctatgcccatggcaatggctgcaaatattttgtgcaaacagattgtccataaagctttccatgcgtctgcttttgtcacggaaacaccaattgctaa |
23325011 |
T |
|
| Q |
201 |
gccctcgaaaacagaatgagcacaaagggcgattatgtatacatatataaatatgtatacagtatctccgattgagctactaggtgcaagatcagtgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23325012 |
gccctcgaaaacagaatgagcacaaagggcgattatgtatacatatataaatatgtatacagtatctccgattgagctactaggtgcaagatcagcgtca |
23325111 |
T |
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| Q |
301 |
ttggtg |
306 |
Q |
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|||||| |
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| T |
23325112 |
ttggtg |
23325117 |
T |
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