View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_18 (Length: 312)
Name: NF4745_high_18
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 5445947 - 5445639
Alignment:
| Q |
1 |
tgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445947 |
tgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacgg |
5445848 |
T |
|
| Q |
101 |
ttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaaggaaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445847 |
ttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaaggaaacat |
5445748 |
T |
|
| Q |
201 |
cgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445747 |
cgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggctc |
5445648 |
T |
|
| Q |
301 |
gttgatgat |
309 |
Q |
| |
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||||||||| |
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| T |
5445647 |
gttgatgat |
5445639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 5440723 - 5440996
Alignment:
| Q |
1 |
tgctttctcacatgctgatcttaac----ctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaag |
96 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5440723 |
tgctttctcacatgctgaccttaactaacctccccaaagctttggaattctcactgatcttcaaatccttcttgtactttctataaaataattcaacaag |
5440822 |
T |
|
| Q |
97 |
acggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctcccaatgtggccttaacctggaacattccttcatcaatggt-cacta |
191 |
Q |
| |
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| ||||||||||||||||||| || |||| | ||||||| || | |||| || |||||| || ||||| | ||| |||||||| |||||| | |||| |
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| T |
5440823 |
aaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtctcaatgttgctttaactttgaatattccttcgtcaatgatggacta |
5440922 |
T |
|
| Q |
192 |
aggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttg |
265 |
Q |
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|||||||||| || |||||||||||||| || ||||| | |||| ||||||||||||||| ||||||||||| |
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| T |
5440923 |
aggaaacatcaaaagttccaccaccaaggtcgaacacgggtgcatttttctcaccttctctctacattttcttg |
5440996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 5433337 - 5433497
Alignment:
| Q |
3 |
ctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggtt |
102 |
Q |
| |
|
|||| ||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
5433337 |
ctttatcacatgctgaccttaatctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattcaacaagacggtt |
5433436 |
T |
|
| Q |
103 |
caccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacc |
163 |
Q |
| |
|
||||||||||||||| || |||| ||||| ||||||||||||| ||||| ||| |||||| |
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|
| T |
5433437 |
caccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggctttaacc |
5433497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 5432586 - 5432671
Alignment:
| Q |
214 |
accaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggct |
299 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||||||||||||| | |||||| || ||||||| ||||| ||||||||| |
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| T |
5432586 |
accaagatcgaacacaagtacattcgtctcaccttctctccacattttcctatccaaagtattagcaataacagctacagtaggct |
5432671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 5432453 - 5432565
Alignment:
| Q |
32 |
aaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccac |
131 |
Q |
| |
|
|||||||| ||||||||| || ||||| || ||||||||| |||| | || ||||||||||||| |||||||||||||||||| |||| | | ||| |
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| T |
5432453 |
aaagctttataattctcaccaatgttcaagtctttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcac |
5432552 |
T |
|
| Q |
132 |
ccaaatgagtatc |
144 |
Q |
| |
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||||||||||||| |
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| T |
5432553 |
ccaaatgagtatc |
5432565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 54396588 - 54396694
Alignment:
| Q |
194 |
gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag |
293 |
Q |
| |
|
||||||||||| |||||||| || | ||||| | |||||| |||| || |||| |||| | |||||| ||||||||||||||||| ||||| |||| |
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| T |
54396588 |
gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag |
54396687 |
T |
|
| Q |
294 |
taggctc |
300 |
Q |
| |
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||||||| |
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| T |
54396688 |
taggctc |
54396694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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