View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_22 (Length: 282)
Name: NF4745_high_22
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 28041741 - 28042006
Alignment:
| Q |
17 |
atgaacgctagtaatccactaaccgggccttcttctatataatgtggggtcatcaaaatcaatccaacccatttctctttctcttacagaacgacaacgc |
116 |
Q |
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| T |
28041741 |
atgaacgctagtaatccactaaccgggccttcttctatataatgtggggtcatcaaaatcaatccaacccatttctctttctcttacagaacgacaacgc |
28041840 |
T |
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| Q |
117 |
tcttcgatttgattctcatcactttcacaaagcaaaaaccctaaaatttcacaatcttcaaatcaaaccctacaatgtcttcatcagaggtagttatcca |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041841 |
tcttcgattcgattctcatcactttcacaaagcaaaaaccctaaaatttcacaatcttcaaatcaaaccctacaatgtcttcatcagaggtagttatcca |
28041940 |
T |
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| Q |
217 |
cacattctctcaaacccaatcagaaaccaaaccttccaccgctgtaacaaccaccgtcgccaccac |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28041941 |
cacattctctcaaacccaatcagaaaccaaaccttccaccgccgtaacaaccaccgtcgccaccac |
28042006 |
T |
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