View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_27 (Length: 251)
Name: NF4745_high_27
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_27 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 30551333 - 30551094
Alignment:
| Q |
12 |
atgaataagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatg |
111 |
Q |
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| T |
30551333 |
atgaataagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatg |
30551234 |
T |
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| Q |
112 |
catttccaaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgattggaatgaaagacaggatctgactaagaatgctttcatgta |
211 |
Q |
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| T |
30551233 |
catttccaaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgatcggaatgaaagacaggatctgactaagaatgctttcatgta |
30551134 |
T |
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| Q |
212 |
acgtgctaatcaaatctctttctccttctgttgtttccct |
251 |
Q |
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| T |
30551133 |
atgtgctaatcatatctctttctccttctattgtttccct |
30551094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 30560038 - 30559802
Alignment:
| Q |
13 |
tgaataagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatgc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||| | ||| |||||||| |
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| T |
30560038 |
tgaataagcactttttcaacaaaattcacaaactgttcctttttcatttttttcttcatagaaccaaacaaactatcatcaaactttagtctggttatgg |
30559939 |
T |
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| Q |
113 |
atttccaaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgattggaatgaaagacaggatctgactaagaatgctttcatgtaa |
212 |
Q |
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| T |
30559938 |
atgtcgaatcttcaatccatcatcttgataagacgctagtgctaaccgtgtctacaattggaatgaaagataggatgtgaccaagaatgctttcatgtaa |
30559839 |
T |
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| Q |
213 |
cgtgctaatcaaatctctttctccttctgttgtttccc |
250 |
Q |
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| T |
30559838 |
agtgctaatc-attctctttctcctactgatgtttccc |
30559802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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