View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_36 (Length: 231)
Name: NF4745_high_36
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2450635 - 2450421
Alignment:
| Q |
1 |
aattgtatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaagaaaagcacagcaatgcaataggaaacgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450635 |
aattgtatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaagaaaagcacagcaatgcaataggaaacgt |
2450536 |
T |
|
| Q |
101 |
tacttgcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgctctagtacccttctgttaaccaaacgaaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2450535 |
tacttgcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgctctagtacccttttgttaaccaaacgaaa |
2450436 |
T |
|
| Q |
201 |
atcgtttcttataat |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
2450435 |
atcgtttcttataat |
2450421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 2461647 - 2461437
Alignment:
| Q |
5 |
gtatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaagaaaagcacagcaatgcaataggaaacgttact |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2461647 |
gtatgccagggtgttcggccatacgggctccataagcaagagcttcatggtcatcaccaccgccaaagaaaagcacagcaatgcaataggaaacattact |
2461548 |
T |
|
| Q |
105 |
tgcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgctctagtacccttctgttaaccaaacgaaaatcg |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||| |||||||| |
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|
| T |
2461547 |
tgcagacacatgacatgaaccaccgagcccacgatcaacaaaaattccaactgagcatgaagcatgctcgagtacccttttgttaaccagtcgaaaatca |
2461448 |
T |
|
| Q |
205 |
tttcttataat |
215 |
Q |
| |
|
||||||||||| |
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|
| T |
2461447 |
tttcttataat |
2461437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 2445869 - 2445665
Alignment:
| Q |
6 |
tatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaagaaaagcacagcaatgcaataggaaacgttactt |
105 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||| |
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| T |
2445869 |
tatgccagggtgctcggccgtacgagctccgtaagcaagagcttcacggtcatcaccaccaccaaagaaaagcacagccacacaataagaaacattactt |
2445770 |
T |
|
| Q |
106 |
gcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgctctagtacccttctgttaaccaaacgaaaatcgt |
205 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| || |||||||| | |
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|
| T |
2445769 |
gcagacacatgacatgtaccaccaagtccgcgatcaacaaaaattccaactgagcatggtgcatgctcgagtacccttttgttaacaaatcgaaaatcat |
2445670 |
T |
|
| Q |
206 |
ttctt |
210 |
Q |
| |
|
||||| |
|
|
| T |
2445669 |
ttctt |
2445665 |
T |
|
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