View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_38 (Length: 226)
Name: NF4745_high_38
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 34679697 - 34679830
Alignment:
| Q |
78 |
tcctaactatttaagctccccacaacaaattctttatgtcctcgtggacctaacaaaggggaccacgacttgtatcattttcatgttcaattgattcatc |
177 |
Q |
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| T |
34679697 |
tcctaactatttaagctccccacaacaaattctttatgtcctcgtggacctaacaaaggggaccacgacttgtatcattttcatgttcaattgattcatc |
34679796 |
T |
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| Q |
178 |
aatgttcatcatcatcatacaaacatatatatat |
211 |
Q |
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| T |
34679797 |
aatgttcatcatcatcatacaaacatatatatat |
34679830 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34679620 - 34679661
Alignment:
| Q |
1 |
agcaaagggcaggtgaaaattgacagggtaatattattagag |
42 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34679620 |
agcaaagagcaggtgaaaattgacagggtaatattattagag |
34679661 |
T |
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