View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_39 (Length: 226)
Name: NF4745_high_39
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_39 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 2705548 - 2705362
Alignment:
| Q |
22 |
cctaatatcatgacaaacaacaattttaccggtggattcggttacggcaacaacaaccttaacggtaacggtggattcggttatggctactcacttgatg |
121 |
Q |
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| T |
2705548 |
cctaatttcatgacaaacaacaattttaccggtggattcggttacggcaacaacaaccttaacggtaacggtggattcggttatggctactcacttgatg |
2705449 |
T |
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| Q |
122 |
gtggttccagtaactcaggaggtggaggtcaaaataattctctccaggttaatgttcagaaactggatggctcaaactacgccgaat |
208 |
Q |
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| T |
2705448 |
gtggttacagtaactcaggaggtggaggtcaaaataattctctccaggttaatgttcagaaactggatggctcaaactacgccgaat |
2705362 |
T |
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Target: scaffold0013 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 11738 - 11924
Alignment:
| Q |
22 |
cctaatatcatgacaaacaacaattttaccggtggattcggttacggcaacaacaaccttaacggtaacggtggattcggttatggctactcacttgatg |
121 |
Q |
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| T |
11738 |
cctaatttcatgataaacaacaattttagcggtggattcggttacggcaacaacaaccttaacggtaacggtggattcggttatggctactcacttgatg |
11837 |
T |
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| Q |
122 |
gtggttccagtaactcaggaggtggaggtcaaaataattctctccaggttaatgttcagaaactggatggctcaaactacgccgaat |
208 |
Q |
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| T |
11838 |
gtggttacagtaactcaggaggtggaggtcaaaataattctctccaggttaatgttcagaaactggatggctcaaactacgccgaat |
11924 |
T |
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Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 6905302 - 6905201
Alignment:
| Q |
100 |
ggttatggctactcacttgatggtggttccagtaactcaggaggtggaggtcaaaataattctctccaggttaatgttcagaaactggatggctcaaact |
199 |
Q |
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| T |
6905302 |
ggttatggctacccacttgatggtggttacagtaactcaggaggtggaggtcaaaataactctcttcaggttaatgttcagaaactggatggatcaaact |
6905203 |
T |
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| Q |
200 |
ac |
201 |
Q |
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|| |
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| T |
6905202 |
ac |
6905201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 13344464 - 13344576
Alignment:
| Q |
99 |
cggttatggctactcacttgatggtggttccagtaactcaggaggtggagg---tcaaaataattctctccaggttaatgttcagaaactggatggctca |
195 |
Q |
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| T |
13344464 |
cggttatgggtacccatttgatggtggttacaataactcaggaggtggtggaagtcaaaataactctctccaggttaatgctcagaaactggatggctca |
13344563 |
T |
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| Q |
196 |
aactacgccgaat |
208 |
Q |
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| T |
13344564 |
aactacgctgaat |
13344576 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 10486985 - 10487041
Alignment:
| Q |
132 |
taactcaggaggtggaggtcaaaataattctctccaggttaatgttcagaaactgga |
188 |
Q |
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| T |
10486985 |
taactcaagaggtggaggtcaaaataactttctccaggttaatgttcagaaactgga |
10487041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 24764756 - 24764686
Alignment:
| Q |
132 |
taactcaggaggtggaggtcaaaataattctctccaggttaatgttcagaaactggatggctcaaactacg |
202 |
Q |
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| T |
24764756 |
taactcataaggtggaggtcaaaataactctctccttgttaatgttcagaaattggttgggtcgaactacg |
24764686 |
T |
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