View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_high_7 (Length: 377)
Name: NF4745_high_7
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 46091936 - 46092295
Alignment:
| Q |
1 |
agtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaacaatattagat |
100 |
Q |
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| T |
46091936 |
agtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaacaatattagat |
46092035 |
T |
|
| Q |
101 |
cttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcagaaaaatatgctca |
200 |
Q |
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| T |
46092036 |
cttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcagaaaaatatgctca |
46092135 |
T |
|
| Q |
201 |
gaaagaaggcgcgaaagcgatgaaattggctactcgtaaggccaaccgcgtcataggtccaattatctctttcggatgggacttctttgaagctgtttac |
300 |
Q |
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| T |
46092136 |
gaaagaaggcgcgaaagccatgaaattggctactcataaggccaaccgcgtcataggtccgattatctctttcggatgggacttctttgaagctgtttac |
46092235 |
T |
|
| Q |
301 |
catggtggtacctttacagagggatttcttaggggaactggtacattttttggaacttat |
360 |
Q |
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| T |
46092236 |
catggtggtacctttacagagggatttcttaggggaactggtacattttttggaacttat |
46092295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 46086833 - 46087191
Alignment:
| Q |
1 |
agtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaacaatattagat |
100 |
Q |
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| T |
46086833 |
agtgggaagtttacattattaaattgctttgatttgggctctggaagtttagcatgtggggttaaagaaagtgtgaagctctatgttaacaatattagat |
46086932 |
T |
|
| Q |
101 |
cttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcagaaaaatatgctca |
200 |
Q |
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|| |||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||| | |||| || |||||||||| |||| || |
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| T |
46086933 |
ctgctcatgttgaaaaagcaagacatgatgcaatccaatctgctcttgttgatgctgcttcacagggtatgtcgccaattgtttcagaaaaacatgcgca |
46087032 |
T |
|
| Q |
201 |
gaaagaaggcgcgaaagcgatgaaattggctactcgtaaggccaaccgcgtcataggtccaattatctctttcggatgggacttctttgaagctgtttac |
300 |
Q |
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|||| |||| |||||| |||||||||||| ||||||||||||||| ||| |||||| || ||||||| ||| |||||||| ||||||||||||||| |
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| T |
46087033 |
gaaacaaggtaaaaaagcggcgaaattggctacccgtaaggccaaccgcatcacaggtcccatcatctcttccggctgggacttttttgaagctgtttac |
46087132 |
T |
|
| Q |
301 |
catggtggtacctttacagagggatttcttaggggaactggtacattttttggaactta |
359 |
Q |
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|
| T |
46087133 |
tatggtggtacctttacagagggattccttagaggaactggtacgttgtttgggactta |
46087191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37476526 - 37476647
Alignment:
| Q |
1 |
agtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaacaatattagat |
100 |
Q |
| |
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||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||| ||||| ||| | || || |||||| | ||| |||||||| |
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| T |
37476526 |
agtggaaagttcacattattaaactgttttgacatgggttctggaacgttggcatgtgctgtcaaagaaggcgtcaaactctatttttacagtattagat |
37476625 |
T |
|
| Q |
101 |
cttctcatgttgaaaaagcaag |
122 |
Q |
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|| ||||||||||||||||||| |
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| T |
37476626 |
ctactcatgttgaaaaagcaag |
37476647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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