View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_1 (Length: 674)
Name: NF4745_low_1
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Original strand, 31060435 - 31060985
Alignment:
| Q |
19 |
ctttttggatacagatcacaacttat--cagcaaggcatgtgacagagaaggtgggtaagaaactggcggagccgtttggggagttcctgctgcatatgc |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31060435 |
ctttttggatacagatcacaacttatatcagcaaggcatgtgacagagaaggtgggtaagaaactggcggagccgtttggggagttcctgcggcatatgc |
31060534 |
T |
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| Q |
117 |
caacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaactatgaaatatccttttaaaact |
216 |
Q |
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| T |
31060535 |
caacacaagttctgcatgcatgtgttttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaactatgaaatatccttttaaaact |
31060634 |
T |
|
| Q |
217 |
atgatgcatgcgtcgcattccttaatgacgcatgctgaagattgaataattcgtttttatctttagtccactaagcatttgcgtcaaattaataacctag |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060635 |
atgatgcatgcgtcacattccttaatgacgcatgctgaagattgaataattcatttttatctttagtccactaagcatttgcgtcaaattaataacctag |
31060734 |
T |
|
| Q |
317 |
tctactaaacaatatttatctaaatacatagtacatataaaatcagtgtgaaagttaaaatagnnnnnnntacttataatttaaaatcacttatggttgt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |
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| T |
31060735 |
tctactaaacaatatttatctaaatacatagtacatataaaatcagtgtgaaagttaaaatagaaaaaaatacttataatttcaaatcacctatggttgt |
31060834 |
T |
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| Q |
417 |
gcacggtatatagatatcacactctcatatacatcaattattagggcacatatacactatttattataatactcattactaagcacatatacttattata |
516 |
Q |
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| T |
31060835 |
gcacgatctatagatatcacactctcatatacatcaattattagggtacatatacactagttattataatactcattactaagcacatatacttattata |
31060934 |
T |
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| Q |
517 |
aaactcattagactaccatacataaccaagcaacaacaacattgatgaaat |
567 |
Q |
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| T |
31060935 |
aaactcattagactaccatacatacccaagcaacaacaacattgatgaaat |
31060985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 12894935 - 12895019
Alignment:
| Q |
105 |
tgctgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaa |
193 |
Q |
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| T |
12894935 |
tgctgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaa |
12895019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 632 - 674
Target Start/End: Complemental strand, 34899975 - 34899933
Alignment:
| Q |
632 |
atctcaacttgaaagttgccactaccaaactttacctatatgc |
674 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgc |
34899933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 7103869 - 7103785
Alignment:
| Q |
105 |
tgctgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaa |
193 |
Q |
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| T |
7103869 |
tgctgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaa |
7103785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 8790761 - 8790845
Alignment:
| Q |
105 |
tgctgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaa |
193 |
Q |
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| T |
8790761 |
tgctgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaa |
8790845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 38233946 - 38233862
Alignment:
| Q |
105 |
tgctgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaa |
193 |
Q |
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| T |
38233946 |
tgctgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaa |
38233862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 19004151 - 19004235
Alignment:
| Q |
105 |
tgctgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaa |
193 |
Q |
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||||||| ||||||||||||||||||| || ||||||||| | |||||||| || |||||||||||| ||||| || |||||||| |
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| T |
19004151 |
tgctgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaa |
19004235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 23326390 - 23326322
Alignment:
| Q |
108 |
tgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaa |
180 |
Q |
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| T |
23326390 |
tgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaatggtgaa |
23326322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 48198290 - 48198206
Alignment:
| Q |
105 |
tgctgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaa |
193 |
Q |
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| T |
48198290 |
tgctgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaa |
48198206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 48206946 - 48206862
Alignment:
| Q |
105 |
tgctgcatatgccaacacaagttctgcatgcatgtgtcttaaaaagaaatggagatgatgacttaaaaatggtgaatcgaaatttaaaa |
193 |
Q |
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||||||| ||||||||||||||||||| || ||||||||| | |||||||| || |||||||||||| ||||| || |||||||| |
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| T |
48206946 |
tgctgcacatgccaacacaagttctgcttg----tgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaa |
48206862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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