View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_11 (Length: 375)
Name: NF4745_low_11
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 108 - 357
Target Start/End: Original strand, 38942708 - 38942956
Alignment:
| Q |
108 |
ctgttttccttttcaaaaaactttcctgaatctacttctacnnnnnnnnctcaactgaatctacacacacaggaaatggcttcatagtaaaaagaataga |
207 |
Q |
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| T |
38942708 |
ctgttttccttttcaaaaagctttcctgaatctacttgtacctaaaaaactcaactgaatctacacacagaggaaatggcttcagagtaaaaagaataga |
38942807 |
T |
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| Q |
208 |
caatcacaacaacctcaacaattcatactatcacaataatctcatctccctttagttgtacacaatcacttcccgttccaaattaccctgcaattcaatc |
307 |
Q |
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| T |
38942808 |
caatgacaacaacctcaacaattcatactaccacaataatcccacctcc-tttagttgtacacaatcacttcccattccaaattaccctgcaattcaatc |
38942906 |
T |
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| Q |
308 |
aaccacccaaccacagtcatattcataactctcattcctactaaattcct |
357 |
Q |
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| T |
38942907 |
aaccacccaaccacagtcatattcataactctcattcctactaaattcct |
38942956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 13724013 - 13723893
Alignment:
| Q |
162 |
ctgaatctacacacacaggaaatggcttcatagtaaaaagaatagacaatcacaacaacctcaacaattcatactat--cacaataatctcatctccctt |
259 |
Q |
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| T |
13724013 |
ctgaatctaaaaacacaggaaatggcttcttggaaaaaagcatacacaatgttaacaacctcaatagctcatacaattctacaataatttcatctccttt |
13723914 |
T |
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| Q |
260 |
tagttgtacacaatcacttcc |
280 |
Q |
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| T |
13723913 |
tagctcaacacaatcacttcc |
13723893 |
T |
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