View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_16 (Length: 336)
Name: NF4745_low_16
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 42131737 - 42131927
Alignment:
| Q |
1 |
tatgctagtaggtaaactcaaataaatcaaccaaaacaggtcctaaaggaagttgctaaacaagtttggttactcagggaatttaatatgatcttctgaa |
100 |
Q |
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| T |
42131737 |
tatgccagtaggtaaactcaaataaatcaaccaaaacaggtcctaaaggaagttgctaaacaagtttggttactcagggaatttgatatgatcttctgaa |
42131836 |
T |
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| Q |
101 |
caag-nnnnnnnnncctttccttaagggataagttactaaatttagaaaagacatgattcacaagttttagagataaaatggagagggagt |
190 |
Q |
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| T |
42131837 |
caagtttttttttttctttccttaagggataagttactaaatttagaaaagacatgattcacaagttttagagataaaatggagagggagt |
42131927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 220 - 319
Target Start/End: Original strand, 15935454 - 15935553
Alignment:
| Q |
220 |
acattacatacctgcaagccaccataatatatgaatccaacggaaccagcgtaaaggatacctaaaacaattagaaagaaacaaataagggatgtgatga |
319 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15935454 |
acattacatacctggaagccaccataatatatgaatccaacggaaccagcgtaaaggatacctaaaacaattagaaagaaacaaataagggttgtgatga |
15935553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24363556 - 24363511
Alignment:
| Q |
1 |
tatgctagtaggtaaactcaaataaatcaaccaaaacaggtcctaa |
46 |
Q |
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||||||||||| |||||||||||||| ||| | ||||||||||||| |
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| T |
24363556 |
tatgctagtagataaactcaaataaaacaatccaaacaggtcctaa |
24363511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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