View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_18 (Length: 321)
Name: NF4745_low_18
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 7023439 - 7023133
Alignment:
| Q |
1 |
atcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7023439 |
atcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatctttcgtattttcttcctctaacaga |
7023340 |
T |
|
| Q |
101 |
gtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtatttagaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7023339 |
gtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaaaaactgtcgtatttagaat |
7023240 |
T |
|
| Q |
201 |
gtagtctacggtaaacttcttcagcaagagttgttttaccaataccagccctacccgaaattccaagaacacgaacatcttgtaactctaaatgtaacga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7023239 |
gtagtctacggtaaacttcttcagcaagagttgttttaccaataccagccctaccccaaattcgaagaacacgaacatcttgtaactctaaatgtaacga |
7023140 |
T |
|
| Q |
301 |
tgattct |
307 |
Q |
| |
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||||||| |
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|
| T |
7023139 |
tgattct |
7023133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 7036537 - 7036231
Alignment:
| Q |
1 |
atcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||| ||||||||| |||||||| || |||||||||||| ||| |
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| T |
7036537 |
atcaagaacaataagaaccttcatgcggcttagccttttcttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaataga |
7036438 |
T |
|
| Q |
101 |
gtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtatttagaat |
200 |
Q |
| |
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||||||||||| |||||||||| |||| ||||||| | | ||| ||||||||||||||||||||||||||| ||| || |||| |||||||||||| |
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| T |
7036437 |
gtggataaaagattttttcttagcctcaaactgtttgttctacatccttctgattcttctcttacattagccataaaataacaactttcgtatttagaac |
7036338 |
T |
|
| Q |
201 |
gtagtctacggtaaacttcttcagcaagagttgttttaccaataccagccctacccgaaattccaagaacacgaacatcttgtaactctaaatgtaacga |
300 |
Q |
| |
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|||||||||| | ||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||| | |||||||||||||| | |
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| T |
7036337 |
gtagtctacgaaatacttcttcagcaatagttgttttaccaataccaggcataccccaaattccaagaacacgaacatcttctgactctaaatgtaacaa |
7036238 |
T |
|
| Q |
301 |
tgattct |
307 |
Q |
| |
|
||||||| |
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|
| T |
7036237 |
tgattct |
7036231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 7075425 - 7075731
Alignment:
| Q |
1 |
atcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||||||||| |||||||| || ||| |||||||| ||| |
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| T |
7075425 |
atcaagaacaataagaaccttcatgcggctaagccttttcttaaccaaaggtggtaatccatttatcatgtcatctttcaaatcttcatcctctaataga |
7075524 |
T |
|
| Q |
101 |
gtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtatttagaat |
200 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| || | || |||| |||| |
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| T |
7075525 |
gtggataaaagcttttttcttaacctcaaactgtttgtgccatatctttctgattcttctcttacattagccataaaacaacaagtttcatattcagaac |
7075624 |
T |
|
| Q |
201 |
gtagtctacggtaaacttcttcagcaagagttgttttaccaataccagccctacccgaaattccaagaacacgaacatcttgtaactctaaatgtaacga |
300 |
Q |
| |
|
||||||| || | ||||||||||||| |||||||||||||||||| | | ||||| |||||||||||||||| ||||||| |||||||||||||| |
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| T |
7075625 |
gtagtcttcgaaatacttcttcagcaatagttgttttaccaatacctggcataccccaaattccaagaacacggacatcttccgactctaaatgtaacat |
7075724 |
T |
|
| Q |
301 |
tgattct |
307 |
Q |
| |
|
||||||| |
|
|
| T |
7075725 |
tgattct |
7075731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 7030827 - 7030522
Alignment:
| Q |
2 |
tcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagag |
101 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||| ||||| |||| |||||||||| |||||||| ||||||||||| ||| || | |
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|
| T |
7030827 |
tcaagaacaataagaaccttcatacggtgaagccttttcttaaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaataggg |
7030728 |
T |
|
| Q |
102 |
tggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtatttagaatg |
201 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||||| ||| || |||| ||||| |||||| | |
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|
| T |
7030727 |
tggataaaataatttttcttaacctcaaactgtttgttccacatctttctgattcttctcttacattagccataaaataacaactttcgtacttagaacg |
7030628 |
T |
|
| Q |
202 |
tagtctacggtaaacttcttcagcaagagttgttttaccaataccagccctacccgaaattccaagaacacgaacatcttgtaactctaaatgtaacgat |
301 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||||||||||| |||| | ||||| |||||||||| ||||||||||||| | |||||||||||||| || |
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| T |
7030627 |
tagtctacgaaatacttcttcagcaatagttgttttaccaatcccaggcataccccaaattccaaggacacgaacatcttctgactctaaatgtaacaat |
7030528 |
T |
|
| Q |
302 |
gattct |
307 |
Q |
| |
|
|||||| |
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|
| T |
7030527 |
gattct |
7030522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 7069133 - 7069225
Alignment:
| Q |
215 |
acttcttcagcaagagttgttttaccaataccagccctacccgaaattccaagaacacgaacatcttgtaactctaaatgtaacgatgattct |
307 |
Q |
| |
|
|||||||| |||| |||||| || ||||||||| | ||||| ||||||||| | ||||||||||||| |||||| |||||| |||||||| |
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|
| T |
7069133 |
acttcttctgcaatagttgtctttccaataccactcataccccaaattccaatagcacgaacatcttgcgactctacttgtaacaatgattct |
7069225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 3963269 - 3963203
Alignment:
| Q |
215 |
acttcttcagcaagagttgttttaccaataccagccctacccgaaattccaagaacacgaacatctt |
281 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||| || ||||| |||| |||| |||||||||||||| |
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|
| T |
3963269 |
acttcttctgcaagggttgtcttgccaataccacccataccccaaatcccaacaacacgaacatctt |
3963203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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