View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_22 (Length: 303)
Name: NF4745_low_22
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 95 - 299
Target Start/End: Complemental strand, 4623201 - 4622994
Alignment:
| Q |
95 |
gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact |
194 |
Q |
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| T |
4623201 |
gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact |
4623102 |
T |
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| Q |
195 |
ttgttgattatgagaatg---atcttaaaagacaccctaagctctctgcccgttggtttaggaagtttcttcaacataacagaattattggttgatgcat |
291 |
Q |
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| T |
4623101 |
ttgttgattatgagaatggtcatcttacaagacaccctaagctctctgcccggtggtttaggaagtttcttcaacataatagaattattggttgatgcat |
4623002 |
T |
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| Q |
292 |
gtcatcat |
299 |
Q |
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|||||||| |
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| T |
4623001 |
gtcatcat |
4622994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 107 - 262
Target Start/End: Complemental strand, 4598673 - 4598518
Alignment:
| Q |
107 |
ggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgattatg |
206 |
Q |
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| T |
4598673 |
ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacaccgtgcgttttggaattaactttgttgattatg |
4598574 |
T |
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| Q |
207 |
agaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt |
262 |
Q |
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| T |
4598573 |
agaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaaatttctt |
4598518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 25015913 - 25015751
Alignment:
| Q |
100 |
aaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgtt |
199 |
Q |
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| T |
25015913 |
aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttggacaactttgaatggctggctggatacactagacgttttggaatgaactatgtt |
25015814 |
T |
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| Q |
200 |
gattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt |
262 |
Q |
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| T |
25015813 |
aattacaatgataatcttaaaagacaccaaaagctctctgcccattggtttaggaactttctt |
25015751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 25037193 - 25037031
Alignment:
| Q |
100 |
aaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgtt |
199 |
Q |
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| T |
25037193 |
aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttagacaactttgaatggctggccggatacagaagacgttttggaattaactttgta |
25037094 |
T |
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| Q |
200 |
gattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt |
262 |
Q |
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||||| | || ||||||||||||||| ||||| ||||||| |||||||||||| |||||| |
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| T |
25037093 |
gattacaaagataatcttaaaagacaccaaaagctttctgcccattggtttaggaattttctt |
25037031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 18805793 - 18805960
Alignment:
| Q |
95 |
gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact |
194 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| | |||||||||||||||| |
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| T |
18805793 |
gtgtgaaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttgaatggcaagacggatacaccttacgttttggaattaact |
18805892 |
T |
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| Q |
195 |
ttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt |
262 |
Q |
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||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18805893 |
ttgttgatttcaaaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttctt |
18805960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 30363051 - 30363135
Alignment:
| Q |
120 |
aaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgatta |
204 |
Q |
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| T |
30363051 |
aaggatattttgcgtggtcgctattggacaattttgaatggggtgaagggtacacagtgaggtttggaatgaactttgtagatta |
30363135 |
T |
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