View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_24 (Length: 289)
Name: NF4745_low_24
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1080243 - 1080379
Alignment:
| Q |
1 |
cacaagggaggctagaagattaaattacattttgttgttcttcttcttggttcttgttattttgctcaatcgcatgtccacacaaggcagtaatatggcc |
100 |
Q |
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| T |
1080243 |
cacaagggaggctagaagattaaattacattttgttgttcttcttcttggttcttgttattttgctcaatcgcatgtccactcaaggcagtaatgtggcc |
1080342 |
T |
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| Q |
101 |
atcataacagtaacagagagagagcagtcaattaaca |
137 |
Q |
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| T |
1080343 |
atcataacagtaacagagagagagcagtcaattaaca |
1080379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 1042670 - 1042791
Alignment:
| Q |
151 |
caaagaatcctgaacaaataacgtctgaagcggatattgcggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgt |
250 |
Q |
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| T |
1042670 |
caaagaatcctgaacgaataacgtctgaagcggatattgtggtcacagatgttggaatcccaaacatagttcgtggtgattggataaagaaaggagctgt |
1042769 |
T |
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| Q |
251 |
ggtcattgacatgggaacaaat |
272 |
Q |
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| T |
1042770 |
cgtcattgatatgggaacaaat |
1042791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 1066809 - 1066921
Alignment:
| Q |
160 |
ctgaacaaataacgtctgaagcggatattgcggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgtggtcattga |
259 |
Q |
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| T |
1066809 |
ctgaacaaataacgtctgaagcgaatattgtggtcacatatattggaatccgaaacatagttcgtggtgattggataaagaaaggagctgtggtcattga |
1066908 |
T |
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| Q |
260 |
catgggaacaaat |
272 |
Q |
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| T |
1066909 |
cacgggaacaaat |
1066921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 1080411 - 1080492
Alignment:
| Q |
191 |
ggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgtggtcattgacatgggaacaaat |
272 |
Q |
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| T |
1080411 |
ggtcacagatgttggaatcccatacatagttcgtggtgattcgataaagaaaggagctgtggtcattgacatgggaacaaat |
1080492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 54037058 - 54036948
Alignment:
| Q |
30 |
ttttgttgttcttcttcttggttcttgttattttgctcaatcgcatgtccacacaaggcagtaatatggccatcataacagta---acagagagagagca |
126 |
Q |
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| T |
54037058 |
ttttgttgttcttcttcatggtttttgttattttgctcaaactcatgtccacatttggcagtagcatggccatcctaacagtaaacagagagagagagca |
54036959 |
T |
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| Q |
127 |
gtcaattaaca |
137 |
Q |
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|||||||||| |
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|
| T |
54036958 |
atcaattaaca |
54036948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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