View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4745_low_3 (Length: 558)
Name: NF4745_low_3
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_3 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 118 - 553
Target Start/End: Original strand, 2271847 - 2272282
Alignment:
| Q |
118 |
tggaatttgtctttaaccactaaaaagaaagaaatttaacattatcgagaagcttagaggcggaggaggctctgctttgaaaaattatgttgttcctttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
2271847 |
tggaatttgtctttaaccactaaaaagaaagaaatttaacattatcgagaagcttagaggcggaggattctctcttttgaaaaattatgttgttcctttt |
2271946 |
T |
|
| Q |
218 |
cttcgagatgatccacgtagtagcgcaccaaatcattgtaaggagagatttctttgatttcgataaactagctaaactcccaaactcagctaaatggtct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |
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|
| T |
2271947 |
cttcgagatgatccacgtagtagcgcaccaaatcattgtaaggagagatttctttgatttcgataaatcaactaaactcccaaactgagctaaatggtct |
2272046 |
T |
|
| Q |
318 |
gttaaattctcaggagaaactgtaggaaaatcgatccacacaaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2272047 |
gttaaattctcaggagaaactgtaggaaaatcgatccacaagaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcag |
2272146 |
T |
|
| Q |
418 |
gctcatgttggtggcaacccacaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtag |
517 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272147 |
actcatgttggtggcaacccgcaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtag |
2272246 |
T |
|
| Q |
518 |
tcgccaaacaaatagagacgcctgatgatgtccatc |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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|
| T |
2272247 |
tcgccaaacaaatagagacgcctgatgatggccatc |
2272282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 2271763 - 2271841
Alignment:
| Q |
9 |
acatcatcagttacaaaagagcataaatcaaagataagagactatgaacctatgcccatatataacaaagggctaagccatc |
90 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||||| |||| |
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|
| T |
2271763 |
acatcatcggttacaaaagagcataaaccaaatataagagacca---acctatgcccatatataacaaagggctaagtcatc |
2271841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 32900528 - 32900416
Alignment:
| Q |
60 |
atgcccatatataacaaagggctaagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaagaaagaaatttaacat |
159 |
Q |
| |
|
||||||||| || | |||||||||||||| | |||||||||||||||||||||| |||| || || | ||| ||||| | || ||||||| ||| ||| |
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|
| T |
32900528 |
atgcccatacatgataaagggctaagccaccacctatggtaatcaaaagcaatattttttgagttagctttttaccaccagaatgaaagaagcttaccat |
32900429 |
T |
|
| Q |
160 |
tatcgagaagctt |
172 |
Q |
| |
|
|||| |||||||| |
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|
| T |
32900428 |
tatcaagaagctt |
32900416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 44 - 536
Target Start/End: Original strand, 22179 - 22676
Alignment:
| Q |
44 |
aagagactatgaacctatgcccatatataacaaagggctaagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaa |
143 |
Q |
| |
|
|||||||||| ||||||| || ||| | ||||||||||||||||| || | ||||||||||||| || ||||||||||||| |||| |||| ||||| |
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|
| T |
22179 |
aagagactatcaacctattcctatacacaacaaagggctaagccaccctatttggtaatcaaaagtcatgattttggaatttgcatttagccaccaaaaa |
22278 |
T |
|
| Q |
144 |
gaaagaaatttaacattatcgaga-----agcttagaggcggaggaggctctgctttgaaaaattatgttgttcctttccttcgagatgatccacgtagt |
238 |
Q |
| |
|
||||||| ||||||||||| | | | | | ||| | |||||| || || |||||||||||||||| |||||||||||| | ||| |||| | ||| |
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|
| T |
22279 |
gaaagaagtttaacattataaaaagaaaaaacattgagacagaggagcctttgttttgaaaaattatgttattcctttccttccaaatggtccatgcagt |
22378 |
T |
|
| Q |
239 |
agcgcaccaaatcattgtaaggagagatttctttgatttcgataaactagctaaactcccaaactcagctaaatggtctgttaaattctcaggagaaact |
338 |
Q |
| |
|
|||||||| ||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| | |||| |||||| ||||||||| |
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|
| T |
22379 |
agcgcaccgaatcaatgtgaggagagatctctttgatttcgatatactagctaaactcccaaactgagctaaatgatttgttgcattctcgggagaaact |
22478 |
T |
|
| Q |
339 |
gtaggaaaatcgatccacacaaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcaggctcatgttggtggcaaccca |
438 |
Q |
| |
|
||| ||| | |||||||| |||| ||||||||||| || | ||||||| || || | ||| |||| || ||||| || |||||| |||||||| |
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|
| T |
22479 |
gtaataaatccaatccacaccaaaacatcgctccataagaaatcgaacaaaggacgttgtaaaaaaagatgctttgcagacttttgttggccgcaaccca |
22578 |
T |
|
| Q |
439 |
caacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcgccaaacaaatagagac |
536 |
Q |
| |
|
| ||| |||||||||||||| |||||| ||| |||| || ||||||| || || |||| |||| || | |||||||| ||||||||| |||||| |
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|
| T |
22579 |
cgacataaaattgagcatcctgatgaagaattcctcgcttgcataaattgttctttgtaggcaatctatttcgaagtagtcaccaaacaaacagagac |
22676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 41238400 - 41238578
Alignment:
| Q |
74 |
caaagggctaagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaagaaagaaatttaacattatcgagaagctta |
173 |
Q |
| |
|
||||||||| |||| | |||||| ||||||||| ||||||||||| | |||| ||||||| || |||||||||||| |||||||||||| ||||||||| |
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|
| T |
41238400 |
caaagggcttggccaccacctatgataatcaaaaacaataattttgtattttgcctttaactaccaaaaagaaagaagtttaacattatctagaagctta |
41238499 |
T |
|
| Q |
174 |
gaggcggaggaggctctgctttgaaaaattatgttgttcctttccttcgagatgatccacgtagtagcgcaccaaatca |
252 |
Q |
| |
|
|| ||||||||||| || ||||||| |||||||||||| |||||||| | || |||||||| ||| |||||||||| |
|
|
| T |
41238500 |
gaaacggaggaggctttgttttgaaatattatgttgttcatttccttccaaatagtccacgtacaagcacaccaaatca |
41238578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 72 - 381
Target Start/End: Original strand, 23787248 - 23787557
Alignment:
| Q |
72 |
aacaaagggctaagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaagaaagaaatttaacattatcgagaagct |
171 |
Q |
| |
|
||||||| | || |||||| ||||| ||||||||| || ||||||| || |||| ||||||||| |||||||||||| || | |||||| ||||||| |
|
|
| T |
23787248 |
aacaaagagttaggccatcacctataataatcaaaaacagtaattttagattttgcctttaaccatcaaaaagaaagaagctttatattatctagaagct |
23787347 |
T |
|
| Q |
172 |
tagaggcggaggaggctctgctttgaaaaattatgttgttcctttccttcgagatgatccacgtagtagcgcaccaaatcattgtaaggagagatttctt |
271 |
Q |
| |
|
| || |||| |||| || || ||||||| ||| | | ||| ||| |||| | || |||||||| ||| || ||||||| ||| | ||||||| || |
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|
| T |
23787348 |
ttgaagcgggggagactttgttttgaaatattctactattcattttcttccaaatagtccacgtacaagcacatcaaatcaatgtgaagagagatcgttt |
23787447 |
T |
|
| Q |
272 |
tgatttcgataaactagctaaactcccaaactcagctaaatggtctgttaaattctcaggagaaactgtaggaaaatcgatccacacaaaaatgccgctc |
371 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| | |||||| |||| |||||| | |||||||||| | |||| || |||||||||||||| ||| || |
|
|
| T |
23787448 |
tgatttcgatatactagctaaactctcaaactgaattaaatgatctgataaattatttggagaaactgaaagaaagtcaatccacacaaaaataccgttc |
23787547 |
T |
|
| Q |
372 |
cataaggaac |
381 |
Q |
| |
|
|||||||||| |
|
|
| T |
23787548 |
cataaggaac |
23787557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 12163204 - 12163090
Alignment:
| Q |
58 |
ctatgcccatatataacaaagggctaagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaagaaagaaatttaac |
157 |
Q |
| |
|
||||||||||| |||||||| | |||||||| | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
12163204 |
ctatgcccatacataacaaaagactaagccaccacctacagtaatcaaaagcaataattttgaaatttgtctttaaccaccaaaaagaaagaagcttaac |
12163105 |
T |
|
| Q |
158 |
attatcgagaagctt |
172 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
12163104 |
attatcaataagctt |
12163090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 12163034 - 12162860
Alignment:
| Q |
242 |
gcaccaaatcattgtaaggagagatttctttgatttcgataaactagctaaactcccaaactcagctaaatggtctgttaaattctcaggagaaactgta |
341 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||| ||||| | || || |||||||||| |||| | || || ||| ||||||| |||||| | ||| | |||| |
|
|
| T |
12163034 |
gcactaaatcaatgtgaggagagatctcttagattttg-tataccagctaaactctcaaattgagttagatgatctgttacattctccgaagatattgta |
12162936 |
T |
|
| Q |
342 |
ggaaaatcgatccacacaaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcag |
417 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||| |||||| |||||| ||||| |||| |||||||| |
|
|
| T |
12162935 |
agaaatctgatccacaccaaaacatcgctccataaggaaccaaacaaaagacactgtagaaaaagatgctctgcag |
12162860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 40614036 - 40613957
Alignment:
| Q |
82 |
taagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaagaaagaaatttaacatta |
161 |
Q |
| |
|
||||||| | |||||| ||||||| | |||||||||| | |||| |||||||||| ||||||||||| | ||||||||| |
|
|
| T |
40614036 |
taagccaccacctatgataatcaagaacaataattttaaattttgcctttaaccaccaaaaagaaagacacttaacatta |
40613957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 30545748 - 30545865
Alignment:
| Q |
82 |
taagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaagaaagaaatttaacattatcgagaagcttagaggcgga |
181 |
Q |
| |
|
||||||| | |||||| ||||||||| |||||||||| || ||| |||||||||| ||||||||| || ||||||||||| ||| |||| ||| ||| |
|
|
| T |
30545748 |
taagccaccacctatgataatcaaaaacaataattttagattttagctttaaccaccaaaaagaaataagattaacattatctagacgcttggagatgga |
30545847 |
T |
|
| Q |
182 |
ggaggctctgctttgaaa |
199 |
Q |
| |
|
||||||| || ||||||| |
|
|
| T |
30545848 |
ggaggctttgttttgaaa |
30545865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 9589706 - 9589754
Alignment:
| Q |
70 |
ataacaaagggctaagccatcccctatggtaatcaaaagcaataatttt |
118 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||| ||||||||| |
|
|
| T |
9589706 |
ataacaaagggctaagacaccacctatggtaatcaaaaggaataatttt |
9589754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 27889087 - 27889138
Alignment:
| Q |
55 |
aacctatgcccatatataacaaagggctaagccatcccctatggtaatcaaa |
106 |
Q |
| |
|
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| |
|
|
| T |
27889087 |
aacctatgcccatacacaataaagggctaagtcatcacctatggtaatcaaa |
27889138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 10721807 - 10721711
Alignment:
| Q |
77 |
agggctaagccatcccctatggtaatcaaaagcaataattttggaatttgtctttaaccactaaaaagaaagaaatttaacattatcgagaagctta |
173 |
Q |
| |
|
|||||||||||| | |||||| || ||| |||||| || || | ||||||||||||||| | |||||||| || ||||||||||| | ||||||| |
|
|
| T |
10721807 |
agggctaagccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagctta |
10721711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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