View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4745_low_30 (Length: 251)

Name: NF4745_low_30
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4745_low_30
NF4745_low_30
[»] chr2 (2 HSPs)
chr2 (12-251)||(30551094-30551333)
chr2 (13-250)||(30559802-30560038)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 30551333 - 30551094
Alignment:
Q  12 atgaataagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30551333 atgaataagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatg 30551234  T
Q  112 catttccaaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgattggaatgaaagacaggatctgactaagaatgctttcatgta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30551233 catttccaaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgatcggaatgaaagacaggatctgactaagaatgctttcatgta 30551134  T
Q  212 acgtgctaatcaaatctctttctccttctgttgtttccct 251  Q
    | |||||||||| |||||||||||||||| ||||||||||    
T  30551133 atgtgctaatcatatctctttctccttctattgtttccct 30551094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 30560038 - 30559802
Alignment:
Q  13 tgaataagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||  ||||||||| ||||||||||||||| | |||  ||||||||     
T  30560038 tgaataagcactttttcaacaaaattcacaaactgttcctttttcatttttttcttcatagaaccaaacaaactatcatcaaactttagtctggttatgg 30559939  T
Q  113 atttccaaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgattggaatgaaagacaggatctgactaagaatgctttcatgtaa 212  Q
    || || || | |||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||| ||||||||||||||||||    
T  30559938 atgtcgaatcttcaatccatcatcttgataagacgctagtgctaaccgtgtctacaattggaatgaaagataggatgtgaccaagaatgctttcatgtaa 30559839  T
Q  213 cgtgctaatcaaatctctttctccttctgttgtttccc 250  Q
     ||||||||| | |||||||||||| ||| ||||||||    
T  30559838 agtgctaatc-attctctttctcctactgatgtttccc 30559802  T

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