View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4745_low_31 (Length: 244)

Name: NF4745_low_31
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4745_low_31
NF4745_low_31
[»] chr6 (2 HSPs)
chr6 (60-133)||(12428355-12428427)
chr6 (133-179)||(12428269-12428315)
[»] chr3 (2 HSPs)
chr3 (60-133)||(25253192-25253264)
chr3 (133-168)||(25253117-25253152)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 12428427 - 12428355
Alignment:
Q  60 tatatttttgtaccatgctattttaactttaacagcgttgggtcaaataaatatattttagtacccatattata 133  Q
    |||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||    
T  12428427 tatattttagtaccatgctattttaactt-aagagcgttgggttaaataaatatattttagtacccatattata 12428355  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 12428315 - 12428269
Alignment:
Q  133 atcttttaatctattttaatatatactttctaaaagtcaatatatct 179  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  12428315 atctcttaatctattttaatatatactttctaaaagtcaaaatatct 12428269  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 25253264 - 25253192
Alignment:
Q  60 tatatttttgtaccatgctattttaactttaacagcgttgggtcaaataaatatattttagtacccatattata 133  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| | ||||||    
T  25253264 tatattttagtaccatgctattttaactt-aacagcgctgggtcaaataattatattttagtaccaaaattata 25253192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 25253152 - 25253117
Alignment:
Q  133 atcttttaatctattttaatatatactttctaaaag 168  Q
    ||||||||||||||||||||||||||||||||||||    
T  25253152 atcttttaatctattttaatatatactttctaaaag 25253117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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