View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4745_low_32 (Length: 243)
Name: NF4745_low_32
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2781832 - 2782064
Alignment:
| Q |
1 |
caattgcatttgatgttttccccttagctaaaacctcaagatactttcctaatagaataaacgaaataagcatcgcactagtctcaaagaaatcagtacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2781832 |
caattgcatttgatgttttccccttagctaaaacctcaagatactttcctaatagaataaacgaaataagcatcgcactagtctcaaagaaatcagtacc |
2781931 |
T |
|
| Q |
101 |
ttcaaaaaccttagaagtagcagctctcaaaacagaataaacagagtagaaataagctgcatttgttcccagtgctatcagcacatccatattagcagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2781932 |
ttcaaaaaccttagaagtagcagctctcaaaacagaataaacagaatagaaataagctgcatttgttcccagtgctatcagcacatccatattagcagaa |
2782031 |
T |
|
| Q |
201 |
ccacggcgcaatgatttataagcaccagtataa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2782032 |
ccacggcgcaatgatttataagcaccagtataa |
2782064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 33900818 - 33900765
Alignment:
| Q |
137 |
ataaacagagtagaaataagctgcatttgttcccagtgctatcagcacatccat |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | |||||||| || |||||| |
|
|
| T |
33900818 |
ataaacagaatagaaataagctgcatttgttcctaatgctatcaacaaatccat |
33900765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University