View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4745_low_4 (Length: 522)
Name: NF4745_low_4
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_4 |
 | |
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| [»] scaffold0038 (2 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 193 - 516
Target Start/End: Complemental strand, 43448105 - 43447766
Alignment:
| Q |
193 |
gagagggaattgtgttgacttgaaattgtcacatgatgtgattttaatgcatattcattttcattaaaatctaattactacaaaaaagttaacttaacat |
292 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43448105 |
gagagagaattgtgttgacttgaaattgtcacatgatgtgattttaatgtatattcattttcattaaaatctaattactacaaaaaagttgacttaacat |
43448006 |
T |
|
| Q |
293 |
aactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtctctttttcagaagta---------ccttg |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43448005 |
aactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtctctttttcagaagtatgctaatttccttg |
43447906 |
T |
|
| Q |
384 |
atttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag---------nnnnnnnnatgggattttgaagcaaagggtttctct |
474 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
43447905 |
atttgatgcaagcttttaaaagtatcaaaatatact-tagtaatgtatggagaagttttttttattttttttatgggatttttaagcaaagggtttctct |
43447807 |
T |
|
| Q |
475 |
ccttttactaagcatatgggtgaaactagctatcatattctt |
516 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43447806 |
cctttta-taagcatatgggtgaaactagctatcatattctt |
43447766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 43448212 - 43448167
Alignment:
| Q |
86 |
tattagaaaaacgcgtagtcaaatattggtgaaaatgactttaaag |
131 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43448212 |
tattagaaaaacgcgtagtcaaatattggtgaaaatgactttaaag |
43448167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 193 - 516
Target Start/End: Complemental strand, 115426 - 115089
Alignment:
| Q |
193 |
gagagggaattgtgttgacttgaaattgtcacatgatgtgattttaatgcatattcattttcattaaaatctaattactacaaaaaagttaacttaacat |
292 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
115426 |
gagagagaattgtgttgacttgaaattgtcacatgatgtgattttaatgcatattcattttcattaaaatttaattactacaaaaaagttgacttaacaa |
115327 |
T |
|
| Q |
293 |
aactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtctctttttcagaagta---------ccttg |
383 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
115326 |
aactacatctctaattgtcctataaatcggctaaatttgcaggcactttccaccacatcgtttcttccgtctctagttcagaattatgctaatatccttg |
115227 |
T |
|
| Q |
384 |
atttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag------nnnnnnnnatgggattttgaagcaaagggtttctctcct |
477 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
115226 |
atttaatgcaagcttttaaaagtatcaaaatatactc-agcaatgtatggagaagtttttttttttttaatgggattttgaagcaaagggtttctctcct |
115128 |
T |
|
| Q |
478 |
tttactaagcatatgggtgaaactagctatcatattctt |
516 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||| |
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|
| T |
115127 |
tttaccaagcattggggtgaaattagctatcatattctt |
115089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 115600 - 115488
Alignment:
| Q |
18 |
agtgaaatattaattagaatgaatctaattattagtgaaaatgactgacnnnnnnncatgtagaaaaatattagaaaaacgcgtagtcaaatattggtga |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115600 |
agtgaaattttaattagaatgaatctaattattagtgaaaatgactgacaaaaaa-catgtagaaaaatattagaaaaacgcgtagtcaaatattggtga |
115502 |
T |
|
| Q |
118 |
aaatgactttaaag |
131 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
115501 |
aaatgactctaaag |
115488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 193 - 516
Target Start/End: Complemental strand, 28324111 - 28323774
Alignment:
| Q |
193 |
gagagggaattgtgttgacttgaaattgtcacatgatgtgattttaatgcatattcattttcattaaaatctaattactacaaaaaagttaacttaacat |
292 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
28324111 |
gagagagaattgtgttgacttgaaattgtcacatgatgtgattttaatgcatattcattttcattaaaatttaattactacaaaaaagttgacttaacaa |
28324012 |
T |
|
| Q |
293 |
aactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtctctttttcagaagta---------ccttg |
383 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||| || ||||| |
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|
| T |
28324011 |
aactacatctctaattgtcctataaatcggctaaatttgcaggcactttccaccacatcgtttcttccgtctctagttcagaattatgctaatatccttg |
28323912 |
T |
|
| Q |
384 |
atttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag------nnnnnnnnatgggattttgaagcaaagggtttctctcct |
477 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28323911 |
atttaatgcaagcttttaaaagtatcaaaatatactc-agcaatgtatggagaagtttttttttttttaatgggattttgaagcaaagggtttctctcct |
28323813 |
T |
|
| Q |
478 |
tttactaagcatatgggtgaaactagctatcatattctt |
516 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||| |
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|
| T |
28323812 |
tttaccaagcattggggtgaaattagctatcatattctt |
28323774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 28324285 - 28324173
Alignment:
| Q |
18 |
agtgaaatattaattagaatgaatctaattattagtgaaaatgactgacnnnnnnncatgtagaaaaatattagaaaaacgcgtagtcaaatattggtga |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28324285 |
agtgaaattttaattagaatgaatctaattattagtgaaaatgactgacaaaaaa-catgtagaaaaatattagaaaaacgcgtagtcaaatattggtga |
28324187 |
T |
|
| Q |
118 |
aaatgactttaaag |
131 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
28324186 |
aaatgactctaaag |
28324173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 193 - 516
Target Start/End: Original strand, 43592484 - 43592820
Alignment:
| Q |
193 |
gagagggaattgtgttgacttgaaattgtcacatgatgtgattttaatgcatattcattttcattaaaatctaattactacaaaaaa-gttaacttaaca |
291 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
43592484 |
gagagagaattgtgttgatttgaaattgtcacatgatgtgtttctaatgcatattcgttttcattaaaatctaattactacaaaaaaagttgacttaaca |
43592583 |
T |
|
| Q |
292 |
taactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtctctttttcagaagta---------cctt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
43592584 |
aaactacctctctaattgtcctataaataggctaaatttgcaggcactttccatcacattgtttcttccgtctctttttcagaagtatgctaatttcctt |
43592683 |
T |
|
| Q |
383 |
gatttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag------nnnnnnnnatgggattttgaagcaaagggtttctctcc |
476 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
43592684 |
gatttgatgcaagcttttaaaagtatcaaaatatactcaa-caatgtatggagaagttttttttttttatataggattttgaagcaaagggtttctctcc |
43592782 |
T |
|
| Q |
477 |
ttttactaagcatatgggtgaaactagctatcatattctt |
516 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
43592783 |
ttttactaaacatatggatgaaac--gctatcatattctt |
43592820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 43592310 - 43592422
Alignment:
| Q |
18 |
agtgaaatattaattagaatgaatctaattattagtgaaaatgactgacnnnnnnncatgtagaaaaatattagaaaaacgcgtagtcaaatattggtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43592310 |
agtgaaatattaattagaatgaatctaattgtcagtgaaaatgacagacaaaaaa-catgtagaaaaatattagaaaaacgcgtagtcaaatattggtga |
43592408 |
T |
|
| Q |
118 |
aaatgactttaaag |
131 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
43592409 |
aaatgactctaaag |
43592422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 47863425 - 47863313
Alignment:
| Q |
18 |
agtgaaatattaattagaatgaatctaattattagtgaaaatgactgacnnnnnnncatgtagaaaaatattagaaaaacgcgtagtcaaatattggtga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
47863425 |
agtgaaatattaattagaatgaatctaattattagtgaaaatgactgacaaaaaat-atgtagaaaattattagaaaaacgcgtaggcaaatattggtga |
47863327 |
T |
|
| Q |
118 |
aaatgactttaaag |
131 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
47863326 |
aaatgactctaaag |
47863313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 47863163 - 47863097
Alignment:
| Q |
450 |
ggattttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatattctt |
516 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
47863163 |
ggattttgaagcaaagggcttctctccttttactaagcatagggatgaaactagctatcatgttctt |
47863097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 47863246 - 47863189
Alignment:
| Q |
379 |
ccttgatttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaa |
437 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
47863246 |
ccttgatttgatgcaagcttttaaaagtatcgaaatatactc-actaatgtatggagaa |
47863189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 52335740 - 52335826
Alignment:
| Q |
193 |
gagagggaattgtgttgacttgaaattgtcacatgatgtgattttaatgcatattcattttcattaaaatctaattactacaaaaaa |
279 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52335740 |
gagagagaattgtgttgatttgaaattgccacatgatgtgattttaatgcatattccttttcattaaaatctaattactacaaaaaa |
52335826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 52335642 - 52335690
Alignment:
| Q |
18 |
agtgaaatattaattagaatgaatctaattattagtgaaaatgactgac |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52335642 |
agtgaaatattaattagaatgaatctaattattagtgaaaatgagtgac |
52335690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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