View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_43 (Length: 219)
Name: NF4745_low_43
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_43 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 1985341 - 1985528
Alignment:
| Q |
18 |
acatgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtgaaacaaatag |
117 |
Q |
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| T |
1985341 |
acatgcggcactaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtggaacaaatag |
1985440 |
T |
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| Q |
118 |
catatgatagagatttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggccactttgatagcttccaataagcctat |
203 |
Q |
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| T |
1985441 |
catatgatagagatttgcaatccgtttcaaacaaagcagtgggcattacgtttgatatggccactttgatagcttccaataagcctat |
1985528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 40851952 - 40852098
Alignment:
| Q |
34 |
agtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtgaaacaaatagcatatgatagagattt |
133 |
Q |
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| T |
40851952 |
agtcaggtctattaaataagagacttctacattgaaagacaaggtctccaaattcatttagaggaacctttgtggaacaaatagcatctggtagagattt |
40852051 |
T |
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| Q |
134 |
gcaatccgtttcaaacaaaagagtgggcattacg--tgatatggcca |
178 |
Q |
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| T |
40852052 |
gcaatctgtttcaaacaaaatagtgtgcattccgtttgatatggcca |
40852098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 44657377 - 44657203
Alignment:
| Q |
32 |
aaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtgaaacaaatagcatatgatagagat |
131 |
Q |
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| T |
44657377 |
aaagtcggatctattaagtaagagacttttacattgaaagacgagatctccaaattcatttagaagaatctttgtggaacaaatagcatctgatagagat |
44657278 |
T |
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| Q |
132 |
ttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggccactttgatagcttccaataagcctatg |
204 |
Q |
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| T |
44657277 |
ttgcaatccgtttcaaacaatacagcgtgcattccgtttgatatgaccattttgataactttcaataagcctatg |
44657203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 27466810 - 27466774
Alignment:
| Q |
32 |
aaagtcgggtctattaagtaagagacttctacattga |
68 |
Q |
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| T |
27466810 |
aaagtcgggtttattaagtaagagacttctacattga |
27466774 |
T |
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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 188461 - 188495
Alignment:
| Q |
32 |
aaagtcgggtctattaagtaagagacttctacatt |
66 |
Q |
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| T |
188461 |
aaagtcgggtctaataagtaagagacttctacatt |
188495 |
T |
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