View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_46 (Length: 201)
Name: NF4745_low_46
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 8289598 - 8289765
Alignment:
| Q |
19 |
gctagtccattcggtgagacacagttcactcttattccatgtgcagccagttgcacgctggctgcacgcattagtcctaatactgcgtgctttgacattg |
118 |
Q |
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| T |
8289598 |
gctagtccattcggtgagacacagttcactcttattccgtgtgcagccagttgcacactggctgcacgcattagccctaatactgcgtgctttgacatcg |
8289697 |
T |
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| Q |
119 |
tgtaatccgttgacctcaggaatccatgactactgtgaacactccccgtgcacacaatacttccccta |
186 |
Q |
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| T |
8289698 |
tgtaatccgttgacctcaggaatccatgactactgtgaacactccccgtgcacacaatactcccccta |
8289765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 8308661 - 8308771
Alignment:
| Q |
25 |
ccattcggtgagacacagttcactcttattccatgtgcagccagttgcacgctggctgcacgcattagtcctaatactgcgtgctttgacattgtgtaat |
124 |
Q |
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| T |
8308661 |
ccattcggcgagacagagttcactcttatcccgtgtgcggctagttgtacgctggccgcacgcattagccccaatactgcatgctttgacatcgtgtaat |
8308760 |
T |
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| Q |
125 |
ccgttgacctc |
135 |
Q |
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| T |
8308761 |
ccgttgacctc |
8308771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 8256891 - 8257003
Alignment:
| Q |
22 |
agtccattcggtgagacacagttcactcttattccatgtgcagccagttgcacgctggctgcacgcattagtcctaatactgcgtgctttgacattgtgt |
121 |
Q |
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| T |
8256891 |
agtccactcggcgaaacacagttgactcgtattccatgtgcggccagttgcacactagccgcacgcattagtcccaacactgcatgctttgacattgtgt |
8256990 |
T |
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| Q |
122 |
aatccgttgacct |
134 |
Q |
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| T |
8256991 |
agtccgttgacct |
8257003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 8259196 - 8259312
Alignment:
| Q |
19 |
gctagtccattcggtgagacacagttcactcttattccatgtgcagccagttgcacgctggctgcacgcattagtcctaatactgcgtgctttgacattg |
118 |
Q |
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||||||||||| || || |||||||| |||||||| || |||| ||||||||||| ||||| ||||||||||| || || ||||| ||||||||||||| |
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| T |
8259196 |
gctagtccatttggcgaaacacagttgactcttatcccgtgtgtggccagttgcacactggccgcacgcattagccccaacactgcatgctttgacattg |
8259295 |
T |
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| Q |
119 |
tgtaatccgttgacctc |
135 |
Q |
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||||||||||||||||| |
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| T |
8259296 |
tgtaatccgttgacctc |
8259312 |
T |
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