View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_5 (Length: 477)
Name: NF4745_low_5
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 38465023 - 38465474
Alignment:
| Q |
8 |
cataggggtgataagtgcaaaaaattcccttgtgaatttaggtggtagtggctgcttctttatctgtaaacaatttcattgtggaaattacaatgcttaa |
107 |
Q |
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| T |
38465023 |
catagtggtgataagtgcaaaaaattcccttgtgaatttaggtggtagtggctgcttctttatctgtaaacaatttcattgtggaaattacaatgcttaa |
38465122 |
T |
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| Q |
108 |
aaatggaagaacaacatgagggaagaagaagaagatgaaataaaagtgagtaatgaactcaccaatgcaaatacaaactgtgggaagagtttatcaagag |
207 |
Q |
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| T |
38465123 |
aaatggaagaacaacatgagggaag---aagaagatgaaataaaagtgagtaatgaacttaccaatgcaaatacaaactgtgggaagagtttatcaagcg |
38465219 |
T |
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| Q |
208 |
cttgaatggtaacctcttgtttttgaatagcattaaatttctgttttgccatagtagctgcctcaacaaggctctcatagccactcttattgtttctgag |
307 |
Q |
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| T |
38465220 |
cttgaatggtaacctcttgttgttgaatagcattaaatttctgttttgccatagtagctgcctcaacaaggctctcatagccactcttattgtttctgag |
38465319 |
T |
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| Q |
308 |
tcctgcaaagaataaaaactatagaaggtgtgataacaattgaattacaacaaaagggtatatatgaacctgtggcagcttgaactgtttttgataaatg |
407 |
Q |
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| T |
38465320 |
tcctgcaaagaataaaaactatagaaggtgtgataacaattgaattacaacaaaagggtatatatgaacctgtggcagcttgaactgtttttgataaatg |
38465419 |
T |
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| Q |
408 |
gtttattgctatcagatcaaaccagttatctttgtagacactttttgctgtttct |
462 |
Q |
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| T |
38465420 |
gtttattgctatcagatcaaaccagttatctttgtagacactttttgctgtttct |
38465474 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 31456515 - 31456434
Alignment:
| Q |
230 |
ttgaatagcattaaatttctgttttgccatagtagctgcctcaacaaggctctcatagccactcttattgtttctgagtcct |
311 |
Q |
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|||| ||| ||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||| |||| |||| |
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| T |
31456515 |
ttgagtagtattaaatttctgtgaagccacggtagctgcctcaacaaggctatcaaaaccactcttattgttactgattcct |
31456434 |
T |
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