View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_6 (Length: 437)
Name: NF4745_low_6
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 38486824 - 38486399
Alignment:
| Q |
1 |
ggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486824 |
ggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagtta |
38486725 |
T |
|
| Q |
101 |
aaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486724 |
aaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggc |
38486625 |
T |
|
| Q |
201 |
cataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
38486624 |
cataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacataaaccaagcaagagaagaaac |
38486525 |
T |
|
| Q |
301 |
gaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486524 |
gaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcc |
38486425 |
T |
|
| Q |
401 |
tcctcaaagtagttgtcctggttcat |
426 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38486424 |
tcctcaaagtagttgtcctggttcat |
38486399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 3686051 - 3685739
Alignment:
| Q |
5 |
tcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaac |
104 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |||||||| || || || || |||||||||||||| | ||| || || || | ||||| || |||| |
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| T |
3686051 |
tcaaacatggatatctgattcaagccaacatctcttcctttacctacctgtatatattcatgatgtgtcacattgccacctcgcaatgtacaattgaaac |
3685952 |
T |
|
| Q |
105 |
cggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccata |
204 |
Q |
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| |||||||| || || || || |||||||||||||| || || |||| ||||| ||| | |||||||| |||||||||||||| ||||| || || |
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| T |
3685951 |
cagcaaaaatatcttcactaatattgatcactctagatgccttgctgactccacccctacacaagaaccaaaatctgtcaaacacatccggatgaccgta |
3685852 |
T |
|
| Q |
205 |
atgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaa |
304 |
Q |
| |
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||||| || | ||||||||||||||||| || | ||| || | || |||||||||| || || | |||||||||||||||||| || ||||| | |
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| T |
3685851 |
gtgcatccgtactttcaaagggtttgccagaaatcgctggcccagtgtcacaaaacttgtctcttgggatgacatgaaccaagcaagcgacgaaacagag |
3685752 |
T |
|
| Q |
305 |
cctgtaaatatat |
317 |
Q |
| |
|
||||| ||||||| |
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|
| T |
3685751 |
cctgtgaatatat |
3685739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 26002270 - 26002355
Alignment:
| Q |
2 |
gcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacg |
87 |
Q |
| |
|
||||||||||||||||| || || | || || ||||||||||| |||||||| ||||| |||||||| |||| ||| ||| |||| |
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| T |
26002270 |
gcttcaaacattgatatctggttaagaccgacgtcccttcctttaccaacttgtatgtactcatgatgagtgacatttccttcacg |
26002355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 30121223 - 30120798
Alignment:
| Q |
1 |
ggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagtta |
100 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| || |||| |||||||||||||| |||||| || |
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|
| T |
30121223 |
ggcttcaaacattgatacttgattcagaccaacatcccttccctttccaacctgaatgtattcatggtgagtgacattacctccacgaagagtacaattg |
30121124 |
T |
|
| Q |
101 |
aaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggc |
200 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||| | |
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| T |
30121123 |
aacccagcaaatatgtcctcgcttatgttgatcactctggaagctttgctgataccacctcgagttaagaaccaaaacctgtcaaacacatctggatgac |
30121024 |
T |
|
| Q |
201 |
cataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaac |
300 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||| ||||||| ||||| |||||||||||||| ||||||||||| || |
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|
| T |
30121023 |
cataatgcattcgaactttcaaaggatttgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgacatgaaccaggcaagagaggacac |
30120924 |
T |
|
| Q |
301 |
gaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcc |
400 |
Q |
| |
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| | || || || || |||||||| || || ||||| |||||||| || | ||| |||||| | | | ||||| | |||||||| | || ||||| |
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| T |
30120923 |
ggagccagtgaaaatgtgttccctgacacctaaaattgttggtttccggacaccgtagtaacgtctatactcttcaaggagatttctcatcttgagtgct |
30120824 |
T |
|
| Q |
401 |
tcctcaaagtagttgtcctggttcat |
426 |
Q |
| |
|
|||||||||||||| ||||| ||||| |
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|
| T |
30120823 |
tcctcaaagtagttatcctgattcat |
30120798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 43955842 - 43955900
Alignment:
| Q |
20 |
tgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatatt |
78 |
Q |
| |
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||||||| ||||||||| || || ||||||||||| |||||||||||||| || ||||| |
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|
| T |
43955842 |
tgattcatcccaacatctctaccctttccaacttggatgtattcatgatgagtaatatt |
43955900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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