View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745_low_7 (Length: 398)
Name: NF4745_low_7
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 169 - 392
Target Start/End: Complemental strand, 18738813 - 18738591
Alignment:
| Q |
169 |
aacaagaaaaaactatgaaactcaa-atttaagaaaaagtggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaattacaagaagaaa |
267 |
Q |
| |
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|||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18738813 |
aacaagaaaaaact--gagactcaagattcaagaaaaagtggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaattacaagaagaaa |
18738716 |
T |
|
| Q |
268 |
gatcaatattccaaacaacgcaaccctaacgttagtcaccaaatcactataaacatcgcacgacgcaagaagtgggttaacaacgacacttgtacctgaa |
367 |
Q |
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|||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| |||| ||||||| |
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| T |
18738715 |
gatcaacattccaaacaacgcaatccgaacgttagtcaccaaatcgctataaacatcgcaccatgcaagaagcgggttaacaacgacgcttgaacctgaa |
18738616 |
T |
|
| Q |
368 |
tcacacatttcaactttcatctctc |
392 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
18738615 |
tcacacatttcaactttcatttctc |
18738591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 18649655 - 18649461
Alignment:
| Q |
198 |
aagaaaaagtggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaattacaagaagaaagatcaatattccaaacaacgcaaccctaac |
297 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |
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| T |
18649655 |
aagaaaaaatggcagaacaaaagaaatgctcaacaataagaggaacagccacagcaatcacaagaagaaagatcaacattccaaacaacgcaatcctaac |
18649556 |
T |
|
| Q |
298 |
gttagtcaccaaatcactataaacatcgcacgacgcaagaagtgggttaacaacgacacttgtacctgaatcacacatttcaactttcatctctc |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||||||||||| |||| |
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| T |
18649555 |
gttagtcaccaaatcactataaacatcgcacgacgcaagaaacgggttaacaacgacgcttgaacctaaatcacacatttcaactttcatttctc |
18649461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 18666348 - 18666154
Alignment:
| Q |
198 |
aagaaaaagtggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaattacaagaagaaagatcaatattccaaacaacgcaaccctaac |
297 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| || ||| |
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| T |
18666348 |
aagaaaaagtggcagggcaaaagaaatgctcaacaataagaggaacagccacaacaattacaagaagaaagatcaacattccaaacaacgcaatccgaac |
18666249 |
T |
|
| Q |
298 |
gttagtcaccaaatcactataaacatcgcacgacgcaagaagtgggttaacaacgacacttgtacctgaatcacacatttcaactttcatctctc |
392 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
18666248 |
gttagtcaccaaatcgctataaacatcgcacgatgcaagaagcgggttaacaacgacgcttgaacctgaatcacacatttcaactttcatttctc |
18666154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 18718120 - 18717926
Alignment:
| Q |
198 |
aagaaaaagtggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaattacaagaagaaagatcaatattccaaacaacgcaaccctaac |
297 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |
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| T |
18718120 |
aagaaaaattggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaatcacaagaagaaagatcaacattccaaacaacgcaatcctaac |
18718021 |
T |
|
| Q |
298 |
gttagtcaccaaatcactataaacatcgcacgacgcaagaagtgggttaacaacgacacttgtacctgaatcacacatttcaactttcatctctc |
392 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
18718020 |
gttagtcaccaaatcattataaacatcgcatgacgcaagaaacgggttaacaacgacgcttgaacctgaatcacacatttcaactttcatttctc |
18717926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 178 - 380
Target Start/End: Complemental strand, 18672133 - 18671930
Alignment:
| Q |
178 |
aaactatgaaactcaa-atttaagaaaaagtggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaattacaagaagaaagatcaatat |
276 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
18672133 |
aaactatgagactcaacattcaagaaaaagtggcagagcaaaagaaatgctcaacaataagaggaacagccacagcaatcacaagaagaaagatcaacat |
18672034 |
T |
|
| Q |
277 |
tccaaacaacgcaaccctaacgttagtcaccaaatcactataaacatcgcacgacgcaagaagtgggttaacaacgacacttgtacctgaatcacacatt |
376 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
18672033 |
tccaaacaacgcaatcctaacgttagtcaccaaatcactataaacatcgaacggcgcaagaaacgggttaacaacgatgcttgaacctgaatcacacatt |
18671934 |
T |
|
| Q |
377 |
tcaa |
380 |
Q |
| |
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|||| |
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|
| T |
18671933 |
tcaa |
18671930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 256 - 392
Target Start/End: Complemental strand, 18685329 - 18685193
Alignment:
| Q |
256 |
tacaagaagaaagatcaatattccaaacaacgcaaccctaacgttagtcaccaaatcactataaacatcgcacgacgcaagaagtgggttaacaacgaca |
355 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
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| T |
18685329 |
tacaagaagaaagatcaacattccaaacaacgcaatccgaacgttagtcaccaaatcgctataaacatcgcacgatgcaagaagcgggttaacaacgacg |
18685230 |
T |
|
| Q |
356 |
cttgtacctgaatcacacatttcaactttcatctctc |
392 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||| |
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| T |
18685229 |
cttgaacctgaatcacacatttcaactttcatttctc |
18685193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 18718280 - 18718180
Alignment:
| Q |
58 |
ttattacactattatttatctctattacactttcatgattcagaaaggaagaaagnnnnnnnnnnnnctgtaactctacaacataactaacacatggaat |
157 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||||||||||||| |
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| T |
18718280 |
ttattacactattgtttatctctattacactttcatgattcagaaagaaagaaa---------aaaactgaaactctacaacacaactaacacatggaat |
18718190 |
T |
|
| Q |
158 |
tgaaatccat |
167 |
Q |
| |
|
|||||||||| |
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|
| T |
18718189 |
tgaaatccat |
18718180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 18649813 - 18649713
Alignment:
| Q |
58 |
ttattacactattatttatctctattacactttcatgattcagaaaggaagaaagnnnnnnnnnnnnctgtaactctacaacataactaacacatggaat |
157 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||| |||||||||||||||| |
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|
| T |
18649813 |
ttattacactattgtttatctctattacactttcatcattcagaaagaaagaaa---------agaactgaaactctacaacacaactaacacatggaat |
18649723 |
T |
|
| Q |
158 |
tgaaatccat |
167 |
Q |
| |
|
|||||||||| |
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|
| T |
18649722 |
tgaaatccat |
18649713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 18738949 - 18738903
Alignment:
| Q |
58 |
ttattacactattatttatctctattacactttcatgattcagaaag |
104 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
18738949 |
ttattacactattgtttatctctattacactttcatgattcagaaag |
18738903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 18672222 - 18672169
Alignment:
| Q |
58 |
ttattacactattatttatctctattacactttcatgattcagaaaggaagaaa |
111 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
18672222 |
ttattacactattgtttatctctattacactttcatcattcagaatgaaagaaa |
18672169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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