View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4746-Insertion-11 (Length: 714)

Name: NF4746-Insertion-11
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4746-Insertion-11
NF4746-Insertion-11
[»] chr4 (14 HSPs)
chr4 (23-333)||(5182230-5182537)
chr4 (23-333)||(4856794-4857101)
chr4 (12-315)||(5172887-5173190)
chr4 (23-333)||(5159982-5160292)
chr4 (23-333)||(5195624-5195937)
chr4 (12-315)||(4842338-4842638)
chr4 (15-305)||(5213782-5214069)
chr4 (341-473)||(12028099-12028231)
chr4 (330-426)||(39390634-39390730)
chr4 (330-423)||(55741190-55741283)
chr4 (117-315)||(7142256-7142456)
chr4 (341-426)||(31302498-31302582)
chr4 (341-457)||(54603949-54604064)
chr4 (30-147)||(5202773-5202887)
[»] chr3 (14 HSPs)
chr3 (330-555)||(18946276-18946501)
chr3 (330-538)||(45031595-45031802)
chr3 (339-472)||(47867733-47867866)
chr3 (341-473)||(37222550-37222682)
chr3 (330-426)||(48161724-48161820)
chr3 (333-426)||(55146798-55146891)
chr3 (334-426)||(30716110-30716202)
chr3 (574-654)||(48165257-48165337)
chr3 (341-435)||(4950652-4950745)
chr3 (576-655)||(52560280-52560358)
chr3 (341-405)||(53562252-53562315)
chr3 (574-654)||(13933-14012)
chr3 (396-459)||(52560502-52560564)
chr3 (356-389)||(18894101-18894134)
[»] chr2 (9 HSPs)
chr2 (330-555)||(19507921-19508146)
chr2 (341-473)||(26170591-26170723)
chr2 (330-413)||(40614476-40614559)
chr2 (341-435)||(34457177-34457270)
chr2 (341-426)||(29899377-29899462)
chr2 (341-407)||(2121036-2121101)
chr2 (568-653)||(28654696-28654780)
chr2 (589-643)||(44070756-44070810)
chr2 (351-388)||(21831310-21831347)
[»] chr7 (18 HSPs)
chr7 (414-555)||(42013721-42013862)
chr7 (403-555)||(34195216-34195367)
chr7 (330-424)||(46529237-46529331)
chr7 (330-469)||(13953205-13953344)
chr7 (330-408)||(3938711-3938789)
chr7 (341-459)||(1804818-1804935)
chr7 (351-457)||(17733830-17733936)
chr7 (341-457)||(31592553-31592668)
chr7 (341-387)||(41957980-41958026)
chr7 (548-609)||(34192024-34192085)
chr7 (574-643)||(41957702-41957771)
chr7 (359-435)||(11409457-11409533)
chr7 (330-404)||(28510509-28510583)
chr7 (358-407)||(2393261-2393310)
chr7 (570-643)||(42014574-42014647)
chr7 (341-384)||(45414538-45414580)
chr7 (593-655)||(42013596-42013657)
chr7 (559-612)||(40792995-40793048)
[»] chr5 (8 HSPs)
chr5 (341-473)||(7250234-7250366)
chr5 (334-426)||(19870703-19870795)
chr5 (330-396)||(9042147-9042213)
chr5 (341-426)||(10826811-10826896)
chr5 (341-425)||(42449763-42449847)
chr5 (341-405)||(23062451-23062514)
chr5 (387-426)||(9042232-9042271)
chr5 (574-645)||(34393986-34394057)
[»] chr8 (7 HSPs)
chr8 (341-472)||(1550772-1550902)
chr8 (342-426)||(44119158-44119242)
chr8 (341-399)||(23877952-23878010)
chr8 (351-459)||(20495294-20495402)
chr8 (355-407)||(23718470-23718522)
chr8 (341-389)||(42100502-42100549)
chr8 (570-643)||(40494077-40494150)
[»] chr6 (4 HSPs)
chr6 (330-426)||(5614045-5614141)
chr6 (330-423)||(1259813-1259906)
chr6 (355-423)||(19273473-19273541)
chr6 (574-654)||(5620757-5620836)
[»] chr1 (8 HSPs)
chr1 (341-426)||(31385559-31385644)
chr1 (341-425)||(42465089-42465173)
chr1 (341-435)||(46200928-46201021)
chr1 (341-403)||(13706360-13706421)
chr1 (355-457)||(18239663-18239765)
chr1 (341-426)||(15292541-15292625)
chr1 (568-659)||(4911548-4911638)
chr1 (372-426)||(27108852-27108906)
[»] scaffold0251 (1 HSPs)
scaffold0251 (341-457)||(1807-1922)
[»] scaffold0013 (1 HSPs)
scaffold0013 (341-423)||(86664-86751)
[»] scaffold1813 (1 HSPs)
scaffold1813 (341-435)||(609-702)
[»] scaffold0184 (1 HSPs)
scaffold0184 (341-435)||(28399-28492)
[»] scaffold0078 (1 HSPs)
scaffold0078 (341-435)||(44352-44445)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 333
Target Start/End: Original strand, 5182230 - 5182537
Alignment:
Q  23 tctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagcactggagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| || |||||||   ||||||    
T  5182230 tctatggaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagt 5182326  T
Q  123 acacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaagtgtcatt 222  Q
     | ||||||||||||||  |||||||||||||| ||||||||||||||| ||||| |||||  |||||||||| |||||||||| |||||| ||||||||    
T  5182327 tctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcatt 5182426  T
Q  223 cctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaagttggttgatagataatcataaca 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5182427 cctacttttctttcatatcaatataatttgatattcttggacctctccagaaacaatttagttggttcattcccaagttggttgatagataatcataaca 5182526  T
Q  323 tgaaatatttg 333  Q
    |||| ||||||    
T  5182527 tgaattatttg 5182537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 333
Target Start/End: Complemental strand, 4857101 - 4856794
Alignment:
Q  23 tctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagcactggagt 122  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||| || |||||||   ||||||    
T  4857101 tctatggaaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagt 4857005  T
Q  123 acacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaagtgtcatt 222  Q
     | ||||||||||||||  |||||||||||||| ||||||||||||||| ||||| |||||  |||||||||| |||||| |||| ||||||||||||||    
T  4857004 tctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcatt 4856905  T
Q  223 cctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaagttggttgatagataatcataaca 322  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  4856904 cctacttttctttcatatcaatataatttggtattcttggacctctccagaaacaatttagttggttcattcccaagttcgttgatagataatcataaca 4856805  T
Q  323 tgaaatatttg 333  Q
    |||| ||||||    
T  4856804 tgaattatttg 4856794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 5172887 - 5173190
Alignment:
Q  12 attcttatcactctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaac 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | | || |||||||||||| |||||||||||||||||  |||||||||||||||||    
T  5172887 attcttatcactctatgaaaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttcatcgaaaaac 5172986  T
Q  112 agcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaag 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||  |||||||||| |||||||||||||||    
T  5172987 agcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaag 5173086  T
Q  212 gaagtgtcattcctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaagttggttgataga 311  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |  |||||||||| || |||| | | ||||| ||| ||||||||||||||||| |    
T  5173087 gaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatattgttggctcactcccaagttggttgataaa 5173186  T
Q  312 taat 315  Q
    ||||    
T  5173187 taat 5173190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 333
Target Start/End: Original strand, 5159982 - 5160292
Alignment:
Q  23 tctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagcactggagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||| |||||||  | ||||||    
T  5159982 tctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagt 5160081  T
Q  123 acacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaagtgtcatt 222  Q
    | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||    
T  5160082 agacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcatt 5160181  T
Q  223 cctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaagttggttgatagataatcataaca 322  Q
    |||||||||||||| |||||||| |||||||| ||  ||||||| ||| ||||||   ||||||| |||| |||||||||||||||| ||||||||||||    
T  5160182 cctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataaca 5160281  T
Q  323 tgaaatatttg 333  Q
    | || ||||||    
T  5160282 ttaattatttg 5160292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 23 - 333
Target Start/End: Original strand, 5195624 - 5195937
Alignment:
Q  23 tctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagcactggagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||| |||||||  | ||||||    
T  5195624 tctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagt 5195723  T
Q  123 acacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaagtgtcatt 222  Q
    | ||||||||||||||| ||||||||||||||||||||||||||||||||||||  || ||  |||||||||| ||||||||||| ||||||||||||||    
T  5195724 agacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcatt 5195823  T
Q  223 cctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaag---ttggttgatagataatcata 319  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||| | ||  ||| ||| |||||||   |||||||||| ||||| ||     
T  5195824 cctacttttctttcatatcaatataatttggtatacttggtcctctccagcaacaatataaatggctcactcccaagtaattggttgatacataatgatg 5195923  T
Q  320 acatgaaatatttg 333  Q
    |||||| |||||||    
T  5195924 acatgatatatttg 5195937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 4842638 - 4842338
Alignment:
Q  12 attcttatcactctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaac 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  4842638 attcttatcactctatgaaaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttcatctaaaaac 4842539  T
Q  112 agcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaag 211  Q
    || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||  |||||||||| |||||| | | ||||    
T  4842538 agtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaag 4842439  T
Q  212 gaagtgtcattcctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaagttggttgataga 311  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |  |||||||||| || |||| |    |||| ||| ||||||||||||||||| |    
T  4842438 gaagtgtcattcctacttttctttcttatcaatataatttgatagtgatggacctctctagcaacaat---attggctcactcccaagttggttgataaa 4842342  T
Q  312 taat 315  Q
    ||||    
T  4842341 taat 4842338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 5213782 - 5214069
Alignment:
Q  15 cttatcactctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagc 114  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||  |||   ||    
T  5213782 cttatccctctttggaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatcacaaa---gc 5213878  T
Q  115 actggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaa 214  Q
    | ||| | | |||||||||||||||  ||||||||||| || ||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||||    
T  5213879 attggtgcaaacattgaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaa 5213978  T
Q  215 gtgtcattcctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaagttggtt 305  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||| ||||  || ||||||| ||||||||| |||||    
T  5213979 gtgtcattcctacttttctttcatatcaatatagtttgatattgatggacctatccagcaacaaattggttggtttattcccaagatggtt 5214069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 341 - 473
Target Start/End: Original strand, 12028099 - 12028231
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| |||| || | ||||||||||||| |||||||||||||||||||||||||| ||||    
T  12028099 ttatgaaaactaacaccctaagcaacctacattgcatgtaaataagaagaaaggtacttacttgtgaattaattgatgaaatttggatgattttcgagca 12028198  T
Q  441 aattgaagtttgggtgattgttggttatatttt 473  Q
    ||||||||||||||||||| |||||||||||||    
T  12028199 aattgaagtttgggtgatttttggttatatttt 12028231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 330 - 426
Target Start/End: Original strand, 39390634 - 39390730
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  39390634 tttgctcaaaattatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaggaacttacttgtgaattaattgatgaaatttgg 39390730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 330 - 423
Target Start/End: Original strand, 55741190 - 55741283
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatt 423  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||    
T  55741190 tttgctcaaaattatgaaaactaacaccctaaacaaactacattgcatgtaaataggaagaaaagaactttcttgtgaattaattgaagaaatt 55741283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 117 - 315
Target Start/End: Original strand, 7142256 - 7142456
Alignment:
Q  117 tggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaagt 216  Q
    |||||||||| ||||||||||||  |||||||||||||||| ||||||| |  |  |||| | | ||  ||||||||||  ||||| ||||||||||| |    
T  7142256 tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacact-tatgttaaaaattgcaaccaaaacatggacaaaggaaat 7142354  T
Q  217 gtcattcctacttttctttcatatcaatataatttgatattcttggacctctccagaaacattttagttggttcattcccaag---ttggttgatagata 313  Q
    |||||||||| |||| ||||||||||| ||||||||  ||||||||||||||||||||||| | ||||||| ||| |||||||   |||||||||| |||    
T  7142355 gtcattcctagttttttttcatatcaacataatttggcattcttggacctctccagaaacaatatagttggctcactcccaagaaattggttgatacata 7142454  T
Q  314 at 315  Q
    ||    
T  7142455 at 7142456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 31302582 - 31302498
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||| || || |||| |||||||||    
T  31302582 ttatgaaaa-taacaccctaaacaaactacattgcatgtaaatagaaataaaataacttacttgttaattacttgaagaaatttgg 31302498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 54603949 - 54604064
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||||| || | ||||||||||||  || |||| | || |||||||||||||  |||    
T  54603949 ttatgaaaa-taacaccctaaacaacctacattgcttgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgca 54604047  T
Q  441 aattgaagtttgggtga 457  Q
    |||  | ||||||||||    
T  54604048 aatgaatgtttgggtga 54604064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 5202773 - 5202887
Alignment:
Q  30 aaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagcactggagtacacatt 129  Q
    |||| ||| ||||||| |||||||| | ||||||||||||||||| | ||  |||||| |||| |||||||| ||   | | |||| ||||| |||||||    
T  5202773 aaatcacacgcaaggaccattttcagtaagcactttggctaatcacttcacgcttcaggatctatatatttcctc---agaaagcattggagaacacatt 5202869  T
Q  130 gaaactgaaagaacaaag 147  Q
    |||||| ||| |||||||    
T  5202870 gaaacttaaaaaacaaag 5202887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 5e-98; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 330 - 555
Target Start/End: Original strand, 18946276 - 18946501
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatg 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||    
T  18946276 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaataacttacttgtgaattaattgatgaaatttgaatg 18946375  T
Q  430 attttcaagcaaattgaagtttgggtgattgttggttatatttttgaatgaagtttgcatgtatgtaatgagaaactgaaggtttctgcgttttgttaag 529  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||    
T  18946376 attttcgagcaaattgaagtttgggtgattgttggttatatttttgaatgaagtttgcatgtatgtaatgagaaactggaggtttctgcgatatgttaag 18946475  T
Q  530 atacataatacaacagtagttaacta 555  Q
    ||||| ||| ||||||| | ||||||    
T  18946476 atacagaatgcaacagtcggtaacta 18946501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 330 - 538
Target Start/End: Complemental strand, 45031802 - 45031595
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatg 429  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||    
T  45031802 tttgctcaaatttatgaaaactaacatcctaaacaaactacattgcatgtaaacaggaaggaaataacttacttgtgaattaattgatgaaatttgaatg 45031703  T
Q  430 attttcaagcaaattgaagtttgggtgattgttggttatatttttgaatgaagtttgcatgtatgtaatgagaaactgaaggtttctgcgttttgttaag 529  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||| || ||| |||||||    
T  45031702 attttcgagcaaattgaagtttgggtgattattggttatacttttgaatggagtttgcatgtatgtaatgagaatctggaggtttttg-gttctgttaag 45031604  T
Q  530 atacataat 538  Q
    |||||||||    
T  45031603 atacataat 45031595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 339 - 472
Target Start/End: Complemental strand, 47867866 - 47867733
Alignment:
Q  339 atttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaag 438  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| |||| || | ||||||  ||||| |||||||||||||||||||||||||| ||    
T  47867866 atttatgaaaactaacaccctaagcaacctacattgcatgtaaataagaagaaaggtacttaccagtgaattaattgatgaaatttggatgattttcgag 47867767  T
Q  439 caaattgaagtttgggtgattgttggttatattt 472  Q
    ||||||||||||||||||||| ||||||||||||    
T  47867766 caaattgaagtttgggtgatttttggttatattt 47867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 341 - 473
Target Start/End: Original strand, 37222550 - 37222682
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    |||||||||||||||||||||  || |||||||||||||||||| |||| || | |||| ||||| || |||||||||||||||||||||||||| ||||    
T  37222550 ttatgaaaactaacaccctaagaaacctacattgcatgtaaataagaagaaaggtactttcttgtaaattaattgatgaaatttggatgattttcgagca 37222649  T
Q  441 aattgaagtttgggtgattgttggttatatttt 473  Q
    ||||||||||||||||||| |||||||||||||    
T  37222650 aattgaagtttgggtgatttttggttatatttt 37222682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 48161820 - 48161724
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  48161820 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaagaaaagaacttacttatgaattaattgatgaaatttgg 48161724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 333 - 426
Target Start/End: Complemental strand, 55146891 - 55146798
Alignment:
Q  333 gctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55146891 gctcaaaattatgaaaactaacaccctaaagaaactacattgcatgtaaataggaaggaaagaacttacttgtgaattaattgatgaaatttgg 55146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 30716202 - 30716110
Alignment:
Q  334 ctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30716202 ctcaaaattatgaaaactaacaccctaaacaaactacactgcatgtaaataggaaggaaagaacttacttgtgaattaattgatgaaatttgg 30716110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 574 - 654
Target Start/End: Original strand, 48165257 - 48165337
Alignment:
Q  574 gttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaacaattttct 654  Q
    ||||||||||| |||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||| |||||||||||||||    
T  48165257 gttgttaactgccgttggaggcatttacgtattttacttatgtcaataggaagatttcattgtcaaaaaaaacaattttct 48165337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 4950652 - 4950745
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttc 435  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||  || |||| | || |||||||||||||    
T  4950652 ttatgaaaa-taacaccctaaacaaactaccttgcatgtaaatagaaagaaaataacttacttgtgatttacttgaagcaaattggatgattttc 4950745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 655
Target Start/End: Complemental strand, 52560358 - 52560280
Alignment:
Q  576 tgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaacaattttcta 655  Q
    ||||||||| || ||||||||||||| |||||||||| ||| ||||| ||||||||||||||| ||||| ||||||||||    
T  52560358 tgttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtca-aaaaagcaattttcta 52560280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 53562252 - 53562315
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgt 405  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||| || | ||||||||||    
T  53562252 ttatgaaaac-aacaccctaaacaacctacattgcatgtaaataggaagaaaggtacttacttgt 53562315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 654
Target Start/End: Original strand, 13933 - 14012
Alignment:
Q  574 gttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaacaattttct 654  Q
    ||||||||||| || |||||||||| ||||||||||||| ||| ||||| || |||||||||| | ||||| |||||||||    
T  13933 gttgttaactgccgctggaggcattaacatattttacttgtgtcaataggaaagtttcattgtta-aaaaagcaattttct 14012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 459
Target Start/End: Complemental strand, 52560564 - 52560502
Alignment:
Q  396 acttacttgtgaaataattgatgaaatttggatgattttcaagcaaattgaagtttgggtgatt 459  Q
    ||||||||||||  || ||||||||||| ||||||||||| |||||| ||| ||||||||||||    
T  52560564 acttacttgtgatttacttgatgaaattaggatgattttcgagcaaa-tgaggtttgggtgatt 52560502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 18894134 - 18894101
Alignment:
Q  356 ccctaaacaaactacattgcatgtaaataggaag 389  Q
    |||||||||| |||||||||||||||||||||||    
T  18894134 ccctaaacaacctacattgcatgtaaataggaag 18894101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 330 - 555
Target Start/End: Complemental strand, 19508146 - 19507921
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatg 429  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19508146 tttgctcaaaattataaaaactaacaccctaaacaaagtacattgcatgtaaataggaaggaaagaacttacttgtgaattaattgatgaaatttggatg 19508047  T
Q  430 attttcaagcaaattgaagtttgggtgattgttggttatatttttgaatgaa-gtttgcatgtatgtaatgagaaactgaaggtttctgcgttttgttaa 528  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||||    
T  19508046 attttcgagcaaattgaagtttgggtgatttttggttata-ttttgaatgaaggtttgcatgtatgtaatgagaaactggaggtttctgcgttctattaa 19507948  T
Q  529 gatacataatacaacagtagttaacta 555  Q
    |||||||||| |||| |||||||||||    
T  19507947 gatacataatgcaacggtagttaacta 19507921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 341 - 473
Target Start/End: Complemental strand, 26170723 - 26170591
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    |||||| |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  26170723 ttatgagaactaacaccctaaacaacctacattgcatgtaaataagaagaaaagaacttacttgtgagttaattgatgaaatttggatgattttcgagca 26170624  T
Q  441 aattgaagtttgggtgattgttggttatatttt 473  Q
    ||||||||||| ||||||  |||||||||||||    
T  26170623 aattgaagtttaggtgatatttggttatatttt 26170591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 330 - 413
Target Start/End: Original strand, 40614476 - 40614559
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataat 413  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  40614476 tttgctcaaaattatgaaaactaacaccctaaacaaactacattgcatgtatataggaaggaaagaacttacttgtgaattaat 40614559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 34457270 - 34457177
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttc 435  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||  || |||| | || |||||||||||||    
T  34457270 ttatgaaaa-taacaccctaaacaaactacattgcatgtaaatagaaagaaaataacttacttgtgatttacttgaagcaaattggatgattttc 34457177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 29899462 - 29899377
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||| ||| ||| ||||||| || || |||| |||||||||    
T  29899462 ttatgaaaactaacaccctaaacaacctacattgcattgaaataggaagaaaataacatacttgttaattacttgaagaaatttgg 29899377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 2121036 - 2121101
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtga 407  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||   ||||||||||||    
T  2121036 ttatgaaaa-taacaccctgaacaacctacattgcatgtaaataggaagaaatatacttacttgtga 2121101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 653
Target Start/End: Original strand, 28654696 - 28654780
Alignment:
Q  568 ccaacagttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaacaattttc 653  Q
    ||||| ||||||||||| || ||| |||||||   |||||||||| ||| ||||||||||||||||||| |  |||||||||||||    
T  28654696 ccaacggttgttaactgccgctgggggcatttcagtattttacttgtgtcaatagaaaggtttcattgtta-gaaaaacaattttc 28654780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 44070810 - 44070756
Alignment:
Q  589 tggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaa 643  Q
    ||||||||||||| |||||||||| ||| ||||| || |||||||||||| ||||    
T  44070810 tggaggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaa 44070756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 21831347 - 21831310
Alignment:
Q  351 taacaccctaaacaaactacattgcatgtaaataggaa 388  Q
    ||||||||||||||| || |||||||||||||||||||    
T  21831347 taacaccctaaacaaccttcattgcatgtaaataggaa 21831310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 7e-48; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 414 - 555
Target Start/End: Complemental strand, 42013862 - 42013721
Alignment:
Q  414 tgatgaaatttggatgattttcaagcaaattgaagtttgggtgattgttggttatatttttgaatgaagtttgcatgtatgtaatgagaaactgaaggtt 513  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  || |||||    
T  42013862 tgatgaaatttggatgattttcgaacaaattgaagtttggatgattgttggttatattttttaatgaagtttgcatgtatgtaatgagaatttggaggtt 42013763  T
Q  514 tctgcgttttgttaagatacataatacaacagtagttaacta 555  Q
    |||||||| |||||||||||| ||| |||| |||||||||||    
T  42013762 tctgcgttatgttaagatacagaatgcaacggtagttaacta 42013721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 403 - 555
Target Start/End: Complemental strand, 34195367 - 34195216
Alignment:
Q  403 tgtgaaataattgatgaaatttggatgattttcaagcaaattgaagtttgggtgattgttggttatatttttgaatgaagtttgcatgtatgtaatgaga 502  Q
    |||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||    
T  34195367 tgtgaattaattgatgaaatttggatgatttccgagcaaattgaaatttgggtgattgtttgttata-ttttgaatgaaatttacatgtatgtaatgaga 34195269  T
Q  503 aactgaaggtttctgcgttttgttaagatacataatacaacagtagttaacta 555  Q
    ||||  |||||||| |||| |||||||||||| ||| |||| |||||||||||    
T  34195268 aactagaggtttctacgttctgttaagatacagaatgcaacggtagttaacta 34195216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 46529237 - 46529331
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaattt 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||    
T  46529237 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatttaaataggaaggaaataacttacttgtgaattaattgatgaaattt 46529331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 330 - 469
Target Start/End: Original strand, 13953205 - 13953344
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatg 429  Q
    ||||||||||  |||| ||| ||| ||| ||||||||||||||||| |||||||| |||| | | |||||||||||||| ||||||||||||||||  ||    
T  13953205 tttgctcaaaaatatgtaaaataaaaccttaaacaaactacattgcttgtaaatatgaagaatataacttacttgtgaattaattgatgaaatttgattg 13953304  T
Q  430 attttcaagcaaattgaagtttgggtgattgttggttata 469  Q
    |||||| ||||||||||||||||||||||| || ||||||    
T  13953305 attttcgagcaaattgaagtttgggtgattttttgttata 13953344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 3938789 - 3938711
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaa 408  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3938789 tttgctcaaaattatgaaaactaacaccctaaacaaactacattgcatgtaaataggaagaaaagaacttacttgtgaa 3938711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 341 - 459
Target Start/End: Original strand, 1804818 - 1804935
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||   | |  ||||||||||||  || |||| |||||| ||||||||||| ||||    
T  1804818 ttatgaaaactagcaccctaaacaaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagca 1804917  T
Q  441 aattgaagtttgggtgatt 459  Q
    || ||| ||||||||||||    
T  1804918 aa-tgaggtttgggtgatt 1804935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 351 - 457
Target Start/End: Original strand, 17733830 - 17733936
Alignment:
Q  351 taacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagcaaattgaagtt 450  Q
    ||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||  || |||| | || |||||||||||||  ||||||  |||||    
T  17733830 taacaccctaaacaacctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaagtt 17733929  T
Q  451 tgggtga 457  Q
    |||||||    
T  17733930 tgggtga 17733936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 31592668 - 31592553
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||  || |||| | || |||||||||||||  |||    
T  31592668 ttatgaaaa-taacaccctaaacaacctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgca 31592570  T
Q  441 aattgaagtttgggtga 457  Q
    |||  | ||||||||||    
T  31592569 aatgaaggtttgggtga 31592553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 41958026 - 41957980
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaatagga 387  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||    
T  41958026 ttatgaaaactagcaccctaaacaaactacattgcatctaaatagga 41957980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 34192085 - 34192024
Alignment:
Q  548 gttaactatcagcggttcttccaacagttgttaactgtcgttggaggcatttacatatttta 609  Q
    |||||||| | ||| |||||||||| ||||||||||| |||||||||||||||| |||||||    
T  34192085 gttaactacctgcgattcttccaacggttgttaactgccgttggaggcatttacgtatttta 34192024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 643
Target Start/End: Complemental strand, 41957771 - 41957702
Alignment:
Q  574 gttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaa 643  Q
    ||||||||||| |||||| ||||||||| |||||||| | ||| ||||| ||||||||||||||| ||||    
T  41957771 gttgttaactgccgttgggggcatttacgtattttacgtgtgtcaataggaaggtttcattgtcaaaaaa 41957702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 11409457 - 11409533
Alignment:
Q  359 taaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttc 435  Q
    ||||||| ||||||||||||||||| | ||| |||||||||||||||||  || |||| ||| || |||||||||||    
T  11409457 taaacaacctacattgcatgtaaatcgaaagaaaagaacttacttgtgatttacttgaagaagttaggatgattttc 11409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 28510509 - 28510583
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttg 404  Q
    |||||||||| ||| | ||| |||  |||||||||| ||||||||||||||||||||||| |||  |||||||||    
T  28510509 tttgctcaaaattaagtaaaataaagccctaaacaacctacattgcatgtaaataggaagaaaatgacttacttg 28510583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 2393261 - 2393310
Alignment:
Q  358 ctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtga 407  Q
    |||||||| ||||||||||||||||||||||| |||  ||||||||||||    
T  2393261 ctaaacaagctacattgcatgtaaataggaagaaaatgacttacttgtga 2393310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 42014574 - 42014647
Alignment:
Q  570 aacagttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaa 643  Q
    ||||||||||||||| |  ||| ||||||||| |||||||||| ||| ||||||||  ||||||||||| ||||    
T  42014574 aacagttgttaactgccactgggggcatttacgtattttacttgtgtcaatagaaatttttcattgtcagaaaa 42014647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 45414580 - 45414538
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaata 384  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  45414580 ttatgaaaa-taacaccctaaacaaactacattgcgtgtaaata 45414538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 42013657 - 42013596
Alignment:
Q  593 ggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaacaattttcta 655  Q
    ||||||||| |||||||||| ||| ||||| ||| ||||||||||| ||||| ||||||||||    
T  42013657 ggcatttacgtattttacttgtgtcaataggaagatttcattgtca-aaaaagcaattttcta 42013596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 612
Target Start/End: Complemental strand, 40793048 - 40792995
Alignment:
Q  559 gcggttcttccaacagttgttaactgtcgttggaggcatttacatattttactt 612  Q
    |||||||||||||  ||||||||||| || ||| ||||||||| ||||||||||    
T  40793048 gcggttcttccaatggttgttaactgccgctgggggcatttacgtattttactt 40792995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 341 - 473
Target Start/End: Complemental strand, 7250366 - 7250234
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaaga-acttacttgtgaaataattgatgaaatttggatgattttcaagc 439  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||| |||    
T  7250366 ttatgaaaactaacaccctaagcaacctacattgcatgtaaataagaag-aaagatacttacttgtgaattaattgatgaaatttggatgattttcgagc 7250268  T
Q  440 aaattgaagtttgggtgattgttggttatatttt 473  Q
    |||||||||||||||||||| |||||||||||||    
T  7250267 aaattgaagtttgggtgatttttggttatatttt 7250234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 19870795 - 19870703
Alignment:
Q  334 ctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  19870795 ctcaaaattatgaaaactaacactctaaacaaactacattgcatgtaaataggaaggaaataacttacttgtgaattaattgatgaaatttgg 19870703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 9042147 - 9042213
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaa 396  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9042147 tttgctcaaatttatgaaaactaacaccctaaacaaactacattacatgtaaatagaaaggaaagaa 9042213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 10826811 - 10826896
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| || || |||| |||||||||    
T  10826811 ttatgaaaactaacaccctaaacaacctacattgcatgtaaataggaagaaaataacttacttgttaattacttgaagaaatttgg 10826896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 42449763 - 42449847
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttg 425  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| ||| ||| ||||||||||| || || |||| ||||||||    
T  42449763 ttatgaaaactaacaccctaaacaacctacattgcatgcaaatagaaagaaaataacttacttgttaattacttgaagaaatttg 42449847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 23062514 - 23062451
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgt 405  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||  ||| |||||||||||    
T  23062514 ttatgaaaa-taacaccctaaacaaactacattgcatgtaaatagaaataaaataacttacttgt 23062451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 9042232 - 9042271
Alignment:
Q  387 aaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9042232 aaggaaagaacttacttgtgaattaattgatgaaatttgg 9042271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 645
Target Start/End: Complemental strand, 34394057 - 34393986
Alignment:
Q  574 gttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaa 645  Q
    ||||||||||| || ||||||||||||| |||||||||| ||| |||| ||| |||||||||| | ||||||    
T  34394057 gttgttaactgccgctggaggcatttacgtattttacttgtgtcaataaaaatgtttcattgtaaaaaaaaa 34393986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 341 - 472
Target Start/End: Complemental strand, 1550902 - 1550772
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||  ||||    
T  1550902 ttatgaaaactaataccctaaacaatctacattgcatgtaaataggaagaaaataacttacttgtg-aattattgatgaaatttggatgattttggagca 1550804  T
Q  441 aattgaagtttgggtgattgttggttatattt 472  Q
    ||||||||||||||||||| | ||||||||||    
T  1550803 aattgaagtttgggtgattttcggttatattt 1550772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 44119158 - 44119242
Alignment:
Q  342 tatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| || || |||| |||| ||||    
T  44119158 tatgaaaactaacaccctaaacaacctacattgcatgtaaataggaagaaaataacttacttgttaattacttgaagaaagttgg 44119242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 23878010 - 23877952
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaactt 399  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23878010 ttataaaaactaacaccctaaacaatctacattgcatgtaaataggaagaaaagaactt 23877952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 351 - 459
Target Start/End: Original strand, 20495294 - 20495402
Alignment:
Q  351 taacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagcaaattgaagtt 450  Q
    ||||||||||||||| ||||||||||||||||||||| | || | ||||||||||||  || ||||   || |||||||||||||  ||||||  | |||    
T  20495294 taacaccctaaacaacctacattgcatgtaaataggaggaaaggtacttacttgtgatttagttgaatcaaattggatgattttcgtgcaaatgaaggtt 20495393  T
Q  451 tgggtgatt 459  Q
    |||||||||    
T  20495394 tgggtgatt 20495402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 23718470 - 23718522
Alignment:
Q  355 accctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtga 407  Q
    ||||||||||| ||||||||||||||||||||||| || | ||||| ||||||    
T  23718470 accctaaacaacctacattgcatgtaaataggaagaaaggtacttatttgtga 23718522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 42100502 - 42100549
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaag 389  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||    
T  42100502 ttatgaaaa-taacaccctaaataacctacattgcatgtaaataggaag 42100549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 40494077 - 40494150
Alignment:
Q  570 aacagttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaa 643  Q
    |||||||||||||||||| ||| |  |||||  |||||||||| ||| ||||| ||| ||||||||||| ||||    
T  40494077 aacagttgttaactgtcgatggggatatttaagtattttacttgtgtcaataggaagttttcattgtcagaaaa 40494150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 5614141 - 5614045
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5614141 tttgctcaaacttatgaaaactaacaccctaaacagactacattgcatgtaaataggaaggaaagaacttacttgtgaattaattgatgaaatttgg 5614045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 330 - 423
Target Start/End: Original strand, 1259813 - 1259906
Alignment:
Q  330 tttgctcaaatttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatt 423  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||    
T  1259813 tttgctcaaaattataaaaactaacaccctaaacaaactacattgcatataaataggaaggaaagaacttacttgtgaattaattgaagaaatt 1259906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 19273473 - 19273541
Alignment:
Q  355 accctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatt 423  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||    
T  19273473 accctaaacaaactacattgcatgtaaatatgaaggaaaaaacttacttgtgaattaattgaagaaatt 19273541  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 654
Target Start/End: Original strand, 5620757 - 5620836
Alignment:
Q  574 gttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaacaattttct 654  Q
    ||||||||||| || ||| ||||||||| || ||||||| ||| ||||| ||| |||||||||||  ||||||||||||||    
T  5620757 gttgttaactgccgctgggggcatttacgtagtttacttgtgtcaataggaagttttcattgtca-gaaaaacaattttct 5620836  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 31385644 - 31385559
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| || || |||| |||||||||    
T  31385644 ttatgaaaactaacaccctaaacaacctacattgcatgtaaataggaagaaaataacttacttgttaattacttgaagaaatttgg 31385559  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 42465089 - 42465173
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttg 425  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||| || || |||| ||||||||    
T  42465089 ttatgaaaactaacaccctaaacaacctacatttcatgtaaataggaagaaaataacttacttgttaattacttgaagaaatttg 42465173  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 46200928 - 46201021
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttc 435  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||  || |||| | || |||||||||||||    
T  46200928 ttatgaaaa-taacaccctaaacaacctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaggcaaattggatgattttc 46201021  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 13706421 - 13706360
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttactt 403  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||  ||| |||||||||    
T  13706421 ttatgaaaa-taacaccctaaacaaactacattgcatgtaaatagaaacaaaataacttactt 13706360  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 18239765 - 18239663
Alignment:
Q  355 accctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagcaaattgaagtttggg 454  Q
    ||||||||||| |||||||||| |||||||||| | || | ||||||||||||  || |||| | || |||||||||||||  ||||||  | |||||||    
T  18239765 accctaaacaacctacattgcaagtaaataggatgaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaggtttggg 18239666  T
Q  455 tga 457  Q
    |||    
T  18239665 tga 18239663  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 15292541 - 15292625
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||  ||  ||| ||||||||||| || || ||||  ||||||||    
T  15292541 ttatgaaaa-taacaccctaaacaaactacaatgcatgtaaataaaaataaaataacttacttgttaattacttgaacaaatttgg 15292625  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 659
Target Start/End: Complemental strand, 4911638 - 4911548
Alignment:
Q  568 ccaacagttgttaactgtcgttggaggcatttacatattttacttctgtgaatagaaaggtttcattgtcacaaaaaacaattttctatttt 659  Q
    ||||| ||||||||| |||| ||  |||||||  ||||||||||| ||| ||||  ||| ||||||||||| ||||||||||||||| ||||    
T  4911638 ccaacggttgttaaccgtcgctgatggcattttaatattttacttgtgtcaatatgaagttttcattgtca-aaaaaacaattttctttttt 4911548  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 27108852 - 27108906
Alignment:
Q  372 ttgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttgg 426  Q
    |||||||||||||||||| ||| ||||||||||| || || |||| |||||||||    
T  27108852 ttgcatgtaaataggaagaaaataacttacttgttaattacttgaagaaatttgg 27108906  T

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Target: scaffold0251 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 1807 - 1922
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttcaagca 440  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||  || |||| | || |||||||||||||  |||    
T  1807 ttatgaaaa-taacaccctaaacaacctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgca 1905  T
Q  441 aattgaagtttgggtga 457  Q
    |||  | ||||||||||    
T  1906 aatgaaggtttgggtga 1922  T

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Target: scaffold0013 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 341 - 423
Target Start/End: Original strand, 86664 - 86751
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaa-----cttacttgtgaaataattgatgaaatt 423  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||     |||||||||||| ||||||| ||||||    
T  86664 ttatgaaaactaacaccctaaacaacctacattgtatgtaaataggaagaaaagaaaagagcttacttgtgaattaattgaagaaatt 86751  T

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Target: scaffold1813 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 609 - 702
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttc 435  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||| || || |||| | || |||||||||||||    
T  609 ttatgaaaa-taacatcctaaacaaactacattgcatgtaaatagaaagaaaataacttacttgttaattacttgaagcaaattggatgattttc 702  T

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Target: scaffold0184 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 28399 - 28492
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttc 435  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||  || |||| | || |||||||||||||    
T  28399 ttatgaaaa-taacaccctaaacaacctacattgcatgtaaataggaagaaaggtacttacttgtgatttagttgaagcaaattggatgattttc 28492  T

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Target: scaffold0078 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 44445 - 44352
Alignment:
Q  341 ttatgaaaactaacaccctaaacaaactacattgcatgtaaataggaaggaaagaacttacttgtgaaataattgatgaaatttggatgattttc 435  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||  || |||| | || |||||||||||||    
T  44445 ttatgaaaa-taacaccctaaacaacctacattgcatgtaaataggaagaaaggtacttacttgtgatttagttgaagcaaattggatgattttc 44352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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