View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746-Insertion-12 (Length: 439)
Name: NF4746-Insertion-12
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746-Insertion-12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 40467006 - 40466811
Alignment:
| Q |
244 |
tatatatctttcatctagttgatatctcactagcaactcacacttgaacttcaacacggttgatttcttgtgtttaacttacacatgttgaagattaact |
343 |
Q |
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| T |
40467006 |
tatatatctttcatctagttgatatctcactagcaactcacacttgaacttcaacacggttgatttcttgtgtttaacttacacatgttgaagattaact |
40466907 |
T |
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| Q |
344 |
atctaaagagcaaacaattacatcttcattaaaacctaaaaatattgagcatatagatcacttttcttgtatatcttttaataaacgctcacgaca |
439 |
Q |
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| T |
40466906 |
atcgaaagagcaaacaatcatatcttcattaaaacctaaaaatattgagcatataaatcacttttcttgtatatcttttaataaatactcacgaca |
40466811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 40467255 - 40467131
Alignment:
| Q |
8 |
caaagtgtgtgacaaaagtttcaagactagctatgggtggatcacgagtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatact |
107 |
Q |
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| T |
40467255 |
caaagtgtgtgacaaaagtttcaagactagctatgggtggatcacgagtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatact |
40467156 |
T |
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| Q |
108 |
agaatataagtttcaatccaaattg |
132 |
Q |
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| T |
40467155 |
agaatataagtttcaatcctaattg |
40467131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 40467072 - 40467026
Alignment:
| Q |
173 |
gttattaacattttgccaaaacttgaaagtattgagtatataaatca |
219 |
Q |
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| T |
40467072 |
gttattaccattttgccaaaacttgaaagtattgagtatataaatca |
40467026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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