View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746-Insertion-13 (Length: 338)
Name: NF4746-Insertion-13
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746-Insertion-13 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 27723869 - 27724200
Alignment:
| Q |
7 |
agttcaaactgatatactatcattagaataccaaaaactcccagaatttgttgtctcaacagaaaatagagaacacgtgcataatataatcaaaatagaa |
106 |
Q |
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| T |
27723869 |
agttcaaactgatatactaacattagaataccaaaaactcccagaatttgttgtctcaacagaaaatagagaacacgtgcataatataattaaaatagaa |
27723968 |
T |
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| Q |
107 |
accaacatgattaacatgtgccatagaaagatttatcttacactaaagagaacttaaattttaaaacttgataatgaaatgataaatcatagaagctatg |
206 |
Q |
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| T |
27723969 |
accaacataattaacatgtgccatagaaagatttatcttacactaaagagaacttaaattttaaaacttgataatgaaataataaatcatagaagctatg |
27724068 |
T |
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| Q |
207 |
ctcataaatcttgagagcaaatacattaagcttaagcaacaaatacctaattcgatattcctcctgtcggaatgatatttttcttgtaaattactgtttg |
306 |
Q |
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| T |
27724069 |
ctcataaatcttaagagcgaatacattaagcttaagcaacaaatacctaattccttattcctcctgtcggaatgatatttttcttgtaaattactgtttg |
27724168 |
T |
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| Q |
307 |
agaatgaaatctttcagctttaacaccaatgt |
338 |
Q |
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| T |
27724169 |
agaatgaaatctttcagctttaacaccaatgt |
27724200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 27735111 - 27735414
Alignment:
| Q |
7 |
agttcaaactgatatactatcattagaataccaaaaactcccagaatttgttgtctcaacagaaaatagagaacacgtgcataatataatcaaaatagaa |
106 |
Q |
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| T |
27735111 |
agttcaaactgatatactatcattagaataccaaaaactcccagaatttgttgtctcaacagaaaatagaaaacacgtgcataatataattaaaatagaa |
27735210 |
T |
|
| Q |
107 |
accaacatgattaacatgtgccatagaaagatttatcttacactaaagagaacttaaattttaaaacttgataatgaaatgataaatcatagaagctatg |
206 |
Q |
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| T |
27735211 |
accaacataatgaaaatgtgccatagaaatatttatcttacactaaagataacttaaaccttaaaactagataataaaatgataaattgaagaagctatg |
27735310 |
T |
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| Q |
207 |
ctcataaatcttgagagcaaatacattaagcttaagcaacaaatacctaattcgatattcctcctgtcggaatgatatttttcttgtaaattactgtttg |
306 |
Q |
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| T |
27735311 |
ctcataaatcttgagagcgaaaacgttaaacttaggcaacaaatacctaattctttattcctctgatcggaatgatatttttcttgtaaagtactatttg |
27735410 |
T |
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| Q |
307 |
agaa |
310 |
Q |
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|||| |
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| T |
27735411 |
agaa |
27735414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 38 - 338
Target Start/End: Original strand, 14681555 - 14681858
Alignment:
| Q |
38 |
caaaaactcccagaatttgttgtctcaacagaaaatagagaacacgtgcataatataatcaaaatagaaaccaacatgattaacatgtgccatagaaaga |
137 |
Q |
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|||||||||||| ||| | |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| || || ||||| |||||||||| |
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| T |
14681555 |
caaaaactcccataataagctgtctcaacacaaaatagagaacatatgcataatataattaaaatagaaaccaacacaatcaaaatgtgtcatagaaaga |
14681654 |
T |
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| Q |
138 |
tttatcttacactaaagagaacttaaattttaaaacttgataatgaaatgataaatcatagaagctatgctcataaatcttgagagcaaatacattaagc |
237 |
Q |
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|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||| |||||||||||||| || || |||||| |
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| T |
14681655 |
tttatcttacactaaagagaacttaagcctt--aacttgataataaaatgataaatcatagcagctatgctcttaaatcttgagagcgaaaacgttaagc |
14681752 |
T |
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| Q |
238 |
ttaagcaacaaatacctaattcgatattcctc-ctg-tcggaatgatatttttcttgtaaattactgtttgagaatga---aatctttcagctttaacac |
332 |
Q |
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||| |||||||||||||||||| |||||||| ||| | ||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
14681753 |
ttaggcaacaaatacctaattctttattcctctctgattggaataatatttttcttgtaaattactgtttgagaagaacataatctttcagttttaacac |
14681852 |
T |
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| Q |
333 |
caatgt |
338 |
Q |
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|||||| |
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| T |
14681853 |
caatgt |
14681858 |
T |
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