View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4746-Insertion-2 (Length: 989)

Name: NF4746-Insertion-2
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4746-Insertion-2
NF4746-Insertion-2
[»] scaffold0003 (7 HSPs)
scaffold0003 (471-982)||(41667-42184)
scaffold0003 (478-982)||(35004-35514)
scaffold0003 (24-200)||(34658-34836)
scaffold0003 (24-200)||(41325-41506)
scaffold0003 (366-445)||(34871-34950)
scaffold0003 (366-445)||(41541-41620)
scaffold0003 (231-267)||(41497-41533)
[»] chr6 (8 HSPs)
chr6 (471-982)||(27445174-27445691)
chr6 (471-979)||(20909306-20909818)
chr6 (471-979)||(20923754-20924266)
chr6 (24-200)||(27445852-27446033)
chr6 (366-445)||(27445738-27445817)
chr6 (387-459)||(20909203-20909274)
chr6 (387-459)||(20923651-20923722)
chr6 (231-267)||(27445825-27445861)
[»] chr8 (4 HSPs)
chr8 (471-979)||(42312420-42312932)
chr8 (346-459)||(42312276-42312388)
chr8 (846-982)||(43227241-43227378)
chr8 (380-459)||(15580653-15580733)
[»] chr1 (5 HSPs)
chr1 (471-779)||(41326204-41326511)
chr1 (346-439)||(47247045-47247137)
chr1 (349-459)||(41326063-41326172)
chr1 (471-551)||(47246912-47246992)
chr1 (844-979)||(41326575-41326712)
[»] chr2 (1 HSPs)
chr2 (24-200)||(14455466-14455643)
[»] chr7 (3 HSPs)
chr7 (903-982)||(11504531-11504610)
chr7 (669-798)||(11504728-11504856)
chr7 (914-964)||(18939810-18939860)
[»] chr3 (2 HSPs)
chr3 (593-692)||(50717647-50717745)
chr3 (593-692)||(50795103-50795201)
[»] chr4 (1 HSPs)
chr4 (916-953)||(30180301-30180338)


Alignment Details
Target: scaffold0003 (Bit Score: 312; Significance: 1e-175; HSPs: 7)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 471 - 982
Target Start/End: Original strand, 41667 - 42184
Alignment:
Q  471 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgt 569  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |    
T  41667 gatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttat 41766  T
Q  570 cttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagct 669  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||    
T  41767 tttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggct 41866  T
Q  670 aattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgc 769  Q
    ||||||||||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||||||||||||    
T  41867 aattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgc 41966  T
Q  770 ataggagcaaacatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnngaaggaaataatcgatcatagaatctaataaggtaat 866  Q
    |||||||||||||||||||||| |||   ||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||| |||||    
T  41967 ataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaat 42066  T
Q  867 ataacataacaacaaacac--gggatgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 964  Q
    |||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  42067 ataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatc 42166  T
Q  965 ctatagtagtggttttaa 982  Q
    |||| |||||||||||||    
T  42167 ctatggtagtggttttaa 42184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 478 - 982
Target Start/End: Original strand, 35004 - 35514
Alignment:
Q  478 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgtcttctgc 576  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||   |  ||| | |||||     
T  35004 cactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataccatctttattttctgt 35103  T
Q  577 tggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgct 676  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35104 tggagcaaaatctgtatggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgct 35203  T
Q  677 gcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggag 776  Q
    |||||||||||||||    ||||||||||||||||  |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35204 gcttcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcataggag 35303  T
Q  777 caaacatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnngaaggaaataatcgatcatagaatctaataaggtaatataacat 873  Q
    ||||||||||||||| |||   ||||||| ||||||||||||| |||||       |||||||||||||||||||||||| |||||| ||||||||||||    
T  35304 caaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatataataaagtaatataacat 35403  T
Q  874 aacaacaaacac--gggatgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagt 971  Q
    ||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  35404 aacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggt 35503  T
Q  972 agtggttttaa 982  Q
    |||||||||||    
T  35504 agtggttttaa 35514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 34658 - 34836
Alignment:
Q  24 ttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcagaattatatatttttagag 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  34658 ttcatttataaactttgacagcaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcataattatatatttttagag 34757  T
Q  124 tattccttttgtgtac--tataatactatagcagctctttggttgatttgacttggtcaaaattaatatagcagcactt 200  Q
    |||||||| |||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  34758 tattccttctgtgtactatataatactatagcagcactttggttgatttgacttagtcaaaattaatatagcagcactt 34836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 41325 - 41506
Alignment:
Q  24 ttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgcagaattatatattttta 120  Q
    |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  41325 ttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgcataattatattttttta 41424  T
Q  121 gagtattccttttgtgtac--tataatactatagcagctctttggttgatttgacttggtcaaaattaatatagcagcactt 200  Q
    ||||||||||| | |||||  |||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||    
T  41425 gagtattccttctttgtactatataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactt 41506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 34871 - 34950
Alignment:
Q  366 agtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccctcagtt 445  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  34871 agtatttcatttagatcataaaaagtcacctttcatagcctttgttgttttcatgcttcaaggaatgaacacccccagtt 34950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 41541 - 41620
Alignment:
Q  366 agtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccctcagtt 445  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  41541 agtatttcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccatcagtt 41620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 41497 - 41533
Alignment:
Q  231 agcaacactttaattcttcaaaattaatatagcagca 267  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41497 agcagcactttaattcttcaaaattaatatagcagca 41533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 471 - 982
Target Start/End: Complemental strand, 27445691 - 27445174
Alignment:
Q  471 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgt 569  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |    
T  27445691 gatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttat 27445592  T
Q  570 cttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagct 669  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||    
T  27445591 tttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggct 27445492  T
Q  670 aattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgc 769  Q
    ||||||||||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||||||||||||    
T  27445491 aattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgc 27445392  T
Q  770 ataggagcaaacatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnngaaggaaataatcgatcatagaatctaataaggtaat 866  Q
    |||||||||||||||||||||| |||   ||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||| |||||    
T  27445391 ataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaat 27445292  T
Q  867 ataacataacaacaaacac--gggatgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 964  Q
    |||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  27445291 ataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatc 27445192  T
Q  965 ctatagtagtggttttaa 982  Q
    |||| |||||||||||||    
T  27445191 ctatggtagtggttttaa 27445174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 471 - 979
Target Start/End: Original strand, 20909306 - 20909818
Alignment:
Q  471 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 570  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |     
T  20909306 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcatt 20909405  T
Q  571 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 670  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||   |||  ||||    
T  20909406 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggcta 20909505  T
Q  671 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 770  Q
    ||| |||||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  20909506 attcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 20909604  T
Q  771 taggagcaaacatgatatttttgaatca--aacaaaaattgcagatttgaccatnnnnnnngaagg-aaataatcgatcatagaatctaataaggtaata 867  Q
    |||||||||| ||||| |||| ||||||  ||  |||  ||||||||| || ||        |||| |||||||  |||||||||| | |||| ||||||    
T  20909605 taggagcaaatatgatgttttggaatcatcaaataaagatgcagattttactatacatatataaggaaaataattaatcatagaatatgataaagtaata 20909704  T
Q  868 taacataacaacaaacac---gggatgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 964  Q
    ||||||||||| ||||||   || ||  |||| |||  ||||| |  ||| ||| ||||||||||| ||||||| |||||||||||||| ||||||||||    
T  20909705 taacataacaataaacacagtggcat-caagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatc 20909803  T
Q  965 ctatagtagtggttt 979  Q
     ||| | ||||||||    
T  20909804 atatggcagtggttt 20909818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 471 - 979
Target Start/End: Original strand, 20923754 - 20924266
Alignment:
Q  471 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 570  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |     
T  20923754 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcatt 20923853  T
Q  571 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 670  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||   |||  ||||    
T  20923854 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggcta 20923953  T
Q  671 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 770  Q
    ||| |||||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  20923954 attcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 20924052  T
Q  771 taggagcaaacatgatatttttgaatca--aacaaaaattgcagatttgaccatnnnnnnngaagg-aaataatcgatcatagaatctaataaggtaata 867  Q
    |||||||||| ||||| |||| ||||||  ||  |||  ||||||||| || ||        |||| |||||||  |||||||||| | |||| ||||||    
T  20924053 taggagcaaatatgatgttttggaatcatcaaataaagatgcagattttactatacatatataaggaaaataattaatcatagaatatgataaagtaata 20924152  T
Q  868 taacataacaacaaacac---gggatgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 964  Q
    ||||||||||| ||||||   || ||  |||| |||  ||||| |  ||| ||| ||||||||||| ||||||| |||||||||||||| ||||||||||    
T  20924153 taacataacaataaacacagtggcat-caagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatc 20924251  T
Q  965 ctatagtagtggttt 979  Q
     ||| | ||||||||    
T  20924252 atatggcagtggttt 20924266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 27446033 - 27445852
Alignment:
Q  24 ttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgcagaattatatattttta 120  Q
    |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  27446033 ttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgcataattatattttttta 27445934  T
Q  121 gagtattccttttgtgtac--tataatactatagcagctctttggttgatttgacttggtcaaaattaatatagcagcactt 200  Q
    ||||||||||| | |||||  |||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||    
T  27445933 gagtattccttctttgtactatataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactt 27445852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 27445817 - 27445738
Alignment:
Q  366 agtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccctcagtt 445  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27445817 agtatttcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccatcagtt 27445738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 459
Target Start/End: Original strand, 20909203 - 20909274
Alignment:
Q  387 aaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccctcagttggtatagcaagagt 459  Q
    ||||||||||||||||   ||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||    
T  20909203 aaagtcaccttttatatt-tttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagt 20909274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 459
Target Start/End: Original strand, 20923651 - 20923722
Alignment:
Q  387 aaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccctcagttggtatagcaagagt 459  Q
    ||||||||||||||||   ||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||    
T  20923651 aaagtcaccttttatatt-tttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagt 20923722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 27445861 - 27445825
Alignment:
Q  231 agcaacactttaattcttcaaaattaatatagcagca 267  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27445861 agcagcactttaattcttcaaaattaatatagcagca 27445825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 471 - 979
Target Start/End: Original strand, 42312420 - 42312932
Alignment:
Q  471 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 570  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||  ||||  |||| |||||| || ||||||   ||  |     
T  42312420 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactactttagaaagctcattaatagaactaatatgattcttcatt 42312519  T
Q  571 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 670  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||   |||  ||||    
T  42312520 ttctgctagaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtgtaggcta 42312619  T
Q  671 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 770  Q
    ||| |||||||| ||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  42312620 atttctgcttcatagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 42312718  T
Q  771 taggagcaaacatgatatttttgaatca--aacaaaaattgcagatttgaccatnnnnnnngaagg-aaataatcgatcatagaatctaataaggtaata 867  Q
    ||||||||||| |||| |||| ||||||  ||  |||  ||||||||| || ||        |||| |||||||  |||||||||| | |||| ||||||    
T  42312719 taggagcaaacgtgatgttttggaatcatcaaataaagatgcagatttaactatacatatataaggaaaataattaatcatagaatatgataaagtaata 42312818  T
Q  868 taacataacaacaaacac---gggatgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 964  Q
    ||| |||||||  |||||   || ||  |||| |||  |||||||  ||| ||| ||||||||||| ||||||| |||||||||| ||| ||||||||||    
T  42312819 taaaataacaatgaacacagtggcat-caagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatc 42312917  T
Q  965 ctatagtagtggttt 979  Q
     ||| | ||||||||    
T  42312918 gtatggcagtggttt 42312932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 42312276 - 42312388
Alignment:
Q  346 acatgtataagttcactcatagtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccctcagtt 445  Q
    |||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||   |||||| |||||||||||||| |||||||||||| |||||    
T  42312276 acatgtataatttcgctcatagtatttcatctacatcagagaaagtcaccttttata-tttttgttcttttcctgcttcaatgaatgaacacccccagtt 42312374  T
Q  446 ggtatagcaagagt 459  Q
     ||  |||||||||    
T  42312375 tgtccagcaagagt 42312388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 846 - 982
Target Start/End: Complemental strand, 43227378 - 43227241
Alignment:
Q  846 catagaatctaataaggtaatataacataacaacaaacacgggatga-aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgat 944  Q
    |||| ||||| |||| |||||||||||||| ||||||||||  | |  |||| | || ||||| || | | |||||||||||||||||| |||| |||||    
T  43227378 cataaaatctgataaagtaatataacataataacaaacacgctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaagaacacttgat 43227279  T
Q  945 tctaaaactattgcttcatcctatagtagtggttttaa 982  Q
    ||||||||| |||||||||||||| ||||| |||||||    
T  43227278 tctaaaactcttgcttcatcctatggtagtagttttaa 43227241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 380 - 459
Target Start/End: Original strand, 15580653 - 15580733
Alignment:
Q  380 atcataaaaagtcaccttttatagcctttgttg-ttttcctgcttcaaggaatgaacaccctcagttggtatagcaagagt 459  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||| || ||| ||||| || |||||  | ||||||||||    
T  15580653 atcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacaaccccagttaatctagcaagagt 15580733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 2e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 471 - 779
Target Start/End: Original strand, 41326204 - 41326511
Alignment:
Q  471 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 570  Q
    |||| ||||||||||||||||||||| ||||||||| |||| ||||||| |||||| |||||| ||||  | || |||||| || ||||||   ||  |     
T  41326204 gatgaatcactcaagcttggatggatttcatttaaattcttccaaaaataaaaatactacttcagaaagcttattaatagaactaatatgattcttcatt 41326303  T
Q  571 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 670  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||   | |  |  |    
T  41326304 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtatagggaa 41326403  T
Q  671 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 770  Q
    ||| || ||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  41326404 attcctacttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 41326502  T
Q  771 taggagcaa 779  Q
    |||||||||    
T  41326503 taggagcaa 41326511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 346 - 439
Target Start/End: Complemental strand, 47247137 - 47247045
Alignment:
Q  346 acatgtataagttcactcatagtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccc 439  Q
    |||||||||| ||| || |||||||||||| ||||||||| ||||||||||||||||   ||||||||||||||||||||| ||||||||||||    
T  47247137 acatgtataatttcgcttatagtatttcatctacatcatagaaagtcaccttttata-tttttgttgttttcctgcttcaatgaatgaacaccc 47247045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 349 - 459
Target Start/End: Original strand, 41326063 - 41326172
Alignment:
Q  349 tgtataagttcactcatagtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccctcagttggt 448  Q
    ||||||| ||| |||||||| |||||| ||||||||| |||||||||||||||    ||||||||||||| ||||||| |||||||||||| ||||| ||    
T  41326063 tgtataatttcgctcatagtttttcatctacatcatagaaagtcaccttttatttt-tttgttgttttcccgcttcaatgaatgaacacccccagtttgt 41326161  T
Q  449 atagcaagagt 459  Q
     ||||||||||    
T  41326162 ctagcaagagt 41326172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 471 - 551
Target Start/End: Complemental strand, 47246992 - 47246912
Alignment:
Q  471 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaataga 551  Q
    |||| ||||||||||||||||||||| |||||||||| ||| ||||||| |||||| |||||| ||||  |||| ||||||    
T  47246992 gatgaatcactcaagcttggatggatttcatttaaagccttccaaaaataaaaatactacttcagaaagctcattaataga 47246912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 844 - 979
Target Start/End: Original strand, 41326575 - 41326712
Alignment:
Q  844 atcatagaatctaataaggtaatataacataacaacaaacac---gggatgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatt 940  Q
    |||||||||| | |||| ||||||||||||||||| ||||||   || || || || |||  |||||||  ||| ||| ||||||||||| ||||| | |    
T  41326575 atcatagaatatgataaagtaatataacataacaataaacacagtggcatcaa-gtaagacgtcttcgattacagagagatcttcctgtcgaacaaaact 41326673  T
Q  941 tgattctaaaactattgcttcatcctatagtagtggttt 979  Q
    ||||||||||||| |||||||||| ||| | ||||||||    
T  41326674 tgattctaaaactcttgcttcatcatatggcagtggttt 41326712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 14455466 - 14455643
Alignment:
Q  24 ttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcagaattatatatttttagag 123  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||    
T  14455466 ttcatttataaactttgacagaaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcataattttatatttttagag 14455565  T
Q  124 tattccttttgtgtac--tataatactatagcagctctttggttgatttgacttggtcaaaattaatatagcagcactt 200  Q
    || ||||| | |||||  ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||    
T  14455566 ta-tccttctttgtactatataatactatagcagcactttggttgatttgacttaatcaaaattaatatagcaacactt 14455643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 903 - 982
Target Start/End: Complemental strand, 11504610 - 11504531
Alignment:
Q  903 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 982  Q
    |||||||  |||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||    
T  11504610 tcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaa 11504531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 669 - 798
Target Start/End: Complemental strand, 11504856 - 11504728
Alignment:
Q  669 taattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtg 768  Q
    |||||||||||| |||||||| || ||||||| ||||| | ||| |||||||||| || |||||||||||  |||||||||| |   |||||||||||||    
T  11504856 taattgctgctttagagtgccatttccctttt-aaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 11504758  T
Q  769 cataggagcaaacatgatatttttgaatca 798  Q
    |||||||| |||||| || |||| ||||||    
T  11504757 cataggagtaaacataatgttttagaatca 11504728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 914 - 964
Target Start/End: Original strand, 18939810 - 18939860
Alignment:
Q  914 aaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 964  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  18939810 aaagatatcttccttccaaacaacacttgattctaaaactcttgattcatc 18939860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 593 - 692
Target Start/End: Complemental strand, 50717745 - 50717647
Alignment:
Q  593 tggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 692  Q
    ||||| ||||||||| ||||| ||||||||||||||  || |||||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50717745 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50717647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 593 - 692
Target Start/End: Original strand, 50795103 - 50795201
Alignment:
Q  593 tggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 692  Q
    ||||| ||||||||| ||||| ||||||||||||||  || |||||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50795103 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50795201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 916 - 953
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
Q  916 agatatcttcctgtcaaacaacatttgattctaaaact 953  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaact 30180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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