View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746-Insertion-3 (Length: 980)
Name: NF4746-Insertion-3
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 761; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 8 - 972
Target Start/End: Complemental strand, 36685635 - 36684672
Alignment:
| Q |
8 |
gtgcatcggtatgttaatgacagttcagagttctgagactgatatgtaccgtttaaaatacattaagaattcattggaagatccgtttaatgacaagagc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685635 |
gtgcatcggtatgttaatgacagttcagagttctgagactgatatgtaccgtttaaaatacattaagaattcattggaagatccgtttaatgacaagagc |
36685536 |
T |
|
| Q |
108 |
atcgatttccatgaatcgttcaagggcggtcttattgttggttatgttttttcactctcttgttctgttatgctgacttgtatgatctactccaaatgtg |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685535 |
atcgatttccatgaatcgttcaagggcggtcttattgttggttatgttttttcactctcttgttctgttatgctgacttgtatgatctactccaaatgtg |
36685436 |
T |
|
| Q |
208 |
tgcaacttaataagagaaaaaacaataacctaaacaaagctaaagaattgggaaaatatatttgctccatcatgagcacgaggacacgaatggtaactaa |
307 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685435 |
tgcaatttaataagagaaaaaacaataacctaaacaaagctaaagaattgggaaaatatatttgctccatcatgagcacgaggacacgaatggtaactaa |
36685336 |
T |
|
| Q |
308 |
tcagatgcacgaattgttacatccgtggctggcgcgcaaagaaatcaaagaggtattgtactctctttattaagcactgtatttcttttttaaataaact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36685335 |
tcagatgcacgaattgttacatccgtggctggcgcgcaaagaaatcaaagaggtattgtactctctttattaagtactgtatttcttttttaaataaact |
36685236 |
T |
|
| Q |
408 |
accagaaaaaataaccaaatttcagnnnnnnnnagaatgacaaagg--nnnnnnnnntaggaatagggttcaaaatggggtatcaaacctcaatacggtt |
505 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685235 |
accagaaaaaataaccaaatttcagttttttttagaatgacaaaggaaaaaaaaaaaaaggaatagggttcaaaatggggtatcaaacctcaatacggtt |
36685136 |
T |
|
| Q |
506 |
tctaaatccgataagagagtttgtgaaaagatcacaaccttgaagatagtccaaacttggcaacnnnnnnnnnnnnntcgcggagcagtcgccctctaaa |
605 |
Q |
| |
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||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
36685135 |
tctaagttcgacaagagagtttgtgaaaagatcacaaccttgaagatagtccaaacttggcaacaaaaagaaaaaaatcgcggagcagttgccctctaaa |
36685036 |
T |
|
| Q |
606 |
ctatcactctaatttttatttgtaatcggac-ttttcaatataattagtctttaaactatttttaattcattagtatagtttcagaactatcattttctc |
704 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685035 |
ctatcactctaatttttatttgcaatcggactttttcaatataattagtctttaaactatttttaattcattagtatagtttcagaactatcattttctc |
36684936 |
T |
|
| Q |
705 |
ttctatatttaaagcagcaaagggactaacttaatgagccgtgatgggtttagatcgatattaaaagaagatttnnnnnnngtctataaaacacaaatta |
804 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36684935 |
ttctatatttaaagcagcaaagggactaacttaatgagccgtgat-agtttagatcgatattaaaagaagattt-aaaaaagtctataaaacacaaatta |
36684838 |
T |
|
| Q |
805 |
aattctctacatttggctttacgatgcagaagaccccgttagattatagaggatctctcataatccttaaaaaatttctctcttaatcgaacagtccaaa |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
36684837 |
aattctctacatttggctttacgatgcagaagaccccgttagattatagaggatctctcataat-cttaaaaattttctctcttaatcgaacagtccaaa |
36684739 |
T |
|
| Q |
905 |
gccatctagctttccaatgaaattgtggtaaaggaattggggttgtataaaaaagtgttacccttcat |
972 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
36684738 |
gccatctagcttcccaatgaaattgtggtaaagg-atttgggttgtataaaaaagtgttacccttcat |
36684672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 36677870 - 36677796
Alignment:
| Q |
17 |
tatgttaatgacagttcagagttctgagactgatatgtaccgtttaaaatacattaagaattcattggaagatcc |
91 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||| | | ||||||||| |||||||||||| ||||||||||| |
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|
| T |
36677870 |
tatgttaatgactagtcagagtactgagactgatatcttctgtttaaaatccattaagaattccttggaagatcc |
36677796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 225 - 362
Target Start/End: Complemental strand, 36677149 - 36677012
Alignment:
| Q |
225 |
aaaaacaataacctaaacaaagctaaagaattgggaaaatatatttgctccatcatgagcacgaggacacgaatggtaactaatcagatgcacgaattgt |
324 |
Q |
| |
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||||| ||| ||||||||||||| | ||||||||| || ||||| |||||||| |||| ||||||| |||||| || ||||||||||| |||||| |
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| T |
36677149 |
aaaaagaatcacctaaacaaagccatagaattgggcaagcatattatctccatcaccagcagcaggacacagatggtagctgatcagatgcaccaattgt |
36677050 |
T |
|
| Q |
325 |
tacatccgtggctggcgcgcaaagaaatcaaagaggta |
362 |
Q |
| |
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||||| ||||| | | | |||||||| |||||||||| |
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| T |
36677049 |
tacattcgtggattgtacacaaagaaaccaaagaggta |
36677012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 36677267 - 36677170
Alignment:
| Q |
110 |
cgatttccatgaatcgttcaagggcggtcttattgttggttatgttttttcactctcttgttctgttatgctgacttgtatgatctactccaaatgtg |
207 |
Q |
| |
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|||||||||| ||| ||||| | ||||||||||||||||| ||||||||||| || |||||||| | ||||||||| ||||||||||||||| |
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| T |
36677267 |
cgatttccatctatcattcaaaagtggtcttattgttggttacgttttttcactaatttcttctgttacattcacttgtatgttctactccaaatgtg |
36677170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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