View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746-Insertion-4 (Length: 966)
Name: NF4746-Insertion-4
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 41743397 - 41743879
Alignment:
| Q |
9 |
taacaacattgaaaagataaaattacacatgagaacgatagattgaatcttcacttcttgtttccaaaaatgaaatcttcaatttactagtctccaaatc |
108 |
Q |
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| T |
41743397 |
taacaacagtgaaaagataaaattacacatgagaacgatagattgaatcttcacttcttgttttaaaaaatgaaatcttcaatttactagtctccaaatc |
41743496 |
T |
|
| Q |
109 |
gtgtccagtgtgttctctagatatcaaacgtgttccccaagtgttaaacgttattttctggtgcaattaggcttaaatagtgttcatattcgtgtagaga |
208 |
Q |
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| T |
41743497 |
gtgtccagtgtgttctctagatatcaaacgtgttccccaagtgttaaacgttattttctggtgcaattaggcttaaatagtgttcatattcgtgtagaga |
41743596 |
T |
|
| Q |
209 |
agctgcgtctttcagtcgcagaaatgt-gggtgttcggtctatctgtagggcctttttgacaacattctagagtttcatgactttgcactttttaccatt |
307 |
Q |
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| T |
41743597 |
agctgcgttttttagtcgcagaaatgtggggtgttcggtctatctgtagggcctttttgtcaacattctagagtatcatgactttgcactttttaccatt |
41743696 |
T |
|
| Q |
308 |
ttctagtccaaattgaatttcggtgatatataattaaaatactgcacaagggtcatcttgccttttcatcaaaaatccgcattgtgctaaaccaaataaa |
407 |
Q |
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| T |
41743697 |
ttctagtccaaattgaatttcggtgatatataattaaaatactgcacaagggtcatcttgccttttcatcaaaaatccgcattgtgctaaaccaaataaa |
41743796 |
T |
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| Q |
408 |
caaaataaagc-------------aggttaatcaagaagatgaaatcattaaaaacttgtctaatcctccaagaacaacttat |
477 |
Q |
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| T |
41743797 |
caaaataaagctacacaaaatataaggttaatcaagaagatgaaatcattaaaaacttgcctaatcctccaagaacaacttat |
41743879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 539 - 966
Target Start/End: Original strand, 41743943 - 41744366
Alignment:
| Q |
539 |
gcctctataaaagatacgaaatacttgttatgaccgagagtcatcccttacacatccataaacattccagttaaaaattaataacatttgacgacagagg |
638 |
Q |
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| T |
41743943 |
gcctctataaaagacacgaaatacttattatgaccgagattcatcccttgcacatccataaacattccagttaaaagttaataatatttgacgacagagg |
41744042 |
T |
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| Q |
639 |
acaacatgaaattaatcacatctccttttgatttttcttccacaaacaaacaacttcaatattatgaccaacatcaataggtttaaaaggacaaccaaaa |
738 |
Q |
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| T |
41744043 |
acaacatgaaattaatcatatctccttttgatttttcttccacaaacaaacaacttcaatattatgaccaacatcaataggtttaaaaggacaaccaaaa |
41744142 |
T |
|
| Q |
739 |
ttctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatcnnnnnnnnnactattcttatggcttatcaattcatg |
838 |
Q |
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| T |
41744143 |
ttctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatc-ttttttttactattcttatggcttatcaattcatg |
41744241 |
T |
|
| Q |
839 |
tttactttcttgtgcatagtcacataatatgggatttaaatggagatagtaatgttattaaatatgaatcaaaatgatgtagtcatatcgattttagtta |
938 |
Q |
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| T |
41744242 |
tttac-ttcttgtgcatagtcacataatat-ggatttaaat-gagatagtcatgttattaaatatggatcaaaatgatgtagtcatatcgattttagtta |
41744338 |
T |
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| Q |
939 |
tcatatgactttgtttttcttttgaaaa |
966 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
41744339 |
tcatatgactttgtttttcttctgaaaa |
41744366 |
T |
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