View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746-Insertion-6 (Length: 788)
Name: NF4746-Insertion-6
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 662
Target Start/End: Original strand, 2655589 - 2656211
Alignment:
| Q |
6 |
catttggagatttcaatttgtgattataaattaaaagagttgccttattggaatcagtgatcaatcaaaatgact-aattgtggtttagactaatcaatc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || |||||||||||||||||||||||| |
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| T |
2655589 |
catttggagatttcaatttgtgattataaattaaaagagttgccttattggaatcact----------atggcctgaattgtggtttagactaatcaatc |
2655678 |
T |
|
| Q |
105 |
gaatgaaccaaattattatcagccgcgaaggaaaataatacgaaaacatgtcaatgacttttattatggattcgtaatattagattataggaaatagcaa |
204 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2655679 |
aaatgaaccaaattattattagcagcgaaggaaaataatacgaaaacatgtcaatgacttttattatggattcgtaatattagattatagcaaatagcaa |
2655778 |
T |
|
| Q |
205 |
ttgnnnnnnn-caaagtcttgaaatcaaatgactaattgcataatagatgaacagaacataatctgccatctgatttttaacgacaaagaaaatgtagac |
303 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2655779 |
ttgaagaaaaacaaagtcttgaaatcaaatgactaattgtataatagatgaacagaacataatctgccatctgattattaacgacaaagaaaatgtagat |
2655878 |
T |
|
| Q |
304 |
aaagaggtaacatcattnnnnnnncatcaaacagatgatcctcgtcaacgattattatgtcagctttaatctttgggttcaattttcacgcgcatgcacc |
403 |
Q |
| |
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||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
2655879 |
aaacaggtaacatcattaaaaaaacatcaaacatatgatcctcgtcaacgattattacgtcagctttaatctttgggttcaattttcacg----agcacc |
2655974 |
T |
|
| Q |
404 |
atcttcgacggctgtgtgagagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagacttaccaa |
503 |
Q |
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| T |
2655975 |
atctttgacggctgtgtgacagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccggatgatcttttcatagaagacttaccaa |
2656074 |
T |
|
| Q |
504 |
caggagtatggaccatgtttgtgtcgctgcacgaatcaccacattctccaacctgctgctgcaaaatatggttttacaataatcaagataaagtaacaaa |
603 |
Q |
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| T |
2656075 |
caggagtatgg----------------------aatcaccacattctacaacctgctgctgcaaaatatgattttacaataatcaagataaaataacaaa |
2656152 |
T |
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| Q |
604 |
attctaacactataatccaagttataagtgtattaaagatcgtaaggttataccatgtt |
662 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2656153 |
attctaacattataatccaagttataagtgtattaaagattataaggttataccatgtt |
2656211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 399 - 558
Target Start/End: Original strand, 47764474 - 47764633
Alignment:
| Q |
399 |
gcaccatcttcgacggctgtgtgagagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagactt |
498 |
Q |
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||||||||||||| |||||||| | |||||||||||||||||||||| ||||||| || |||||| |||| ||| ||||||||||||||| |||| || |
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| T |
47764474 |
gcaccatcttcgagggctgtgtcacagatgcttgtccaacctcgccatttccattcgttgaagaatctatattaccggatgatcttttcatagaagattt |
47764573 |
T |
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| Q |
499 |
accaacaggagtatggaccatgtttgtgtcgctgcacgaatcaccacattctccaacctg |
558 |
Q |
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||||||||||| ||||| |||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
47764574 |
gccaacaggagtgtggacaatgtttgtgtcgctacacgaatcgccacattctacaacctg |
47764633 |
T |
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