View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746-Insertion-7 (Length: 762)
Name: NF4746-Insertion-7
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 7 - 711
Target Start/End: Original strand, 866655 - 867356
Alignment:
| Q |
7 |
aagaacctatttattttgcatgtagtgatagcttaccttgtaaaggtatagccctcgatacaataaagcttgaatcaagccaaaactccaaagttccttt |
106 |
Q |
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| T |
866655 |
aagaacctatttattttgcatgtagtgatagcttaccttgtaaaggtataacccttgatacaataaagcttgaatcaagccaaaactccaatgttccttt |
866754 |
T |
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| Q |
107 |
ctgttggaaagcatatggtgagttgaaaactgaaattgtttctcctgttgattgtcttcaaagagggaatccatcaagtggtggaatcacttctaacaaa |
206 |
Q |
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| T |
866755 |
ttgttggaaagcatatggtgaattgaaaactgaaattgttcctcctgttgattgtcttcaaagagggaatccatcaagtggtggaatcacttctaacaaa |
866854 |
T |
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| Q |
207 |
gaaagttcttgctgaatttaataatcatcgacacttcaaattaaaaatttgtttaggatctgacacttgtgtcagtgtcagtgtttggcatcggcaaatg |
306 |
Q |
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| T |
866855 |
gaaagttcttgctgaatttaataatcatcgacacttcagattaaaaatttgtttaggatctgacacttgtgtcagtgt------ttggcatcggcaaatg |
866948 |
T |
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| Q |
307 |
ttttata--ttcaattatttattttcttaaatagtatcagtgtcaatgtggtgtttggtgtctatatgcttcatagatattacattcaaaggattatcgt |
404 |
Q |
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| T |
866949 |
ttttatatattcaattctttattttcttaaatagtatcagtgtcaatgtggtgtttggtgtctatatgcttcatagatattatattcaaaggattatcgt |
867048 |
T |
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| Q |
405 |
ataatatataggttatatatagaaaattgttatcttgatttccaattcattgtgttggggaaattaagattatagtatacatataggaagttgttatttt |
504 |
Q |
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| T |
867049 |
ataatatataggttatatatagaaaattgttatcttgatttccaattcattgtgttggggaaattaagattatagtatacatataagaagttgttatttt |
867148 |
T |
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| Q |
505 |
gatttctaaattagtttatgtataaagtaatgttgggtgacatattaagattatatttgactttatgatttgcaaatagcatttttatttaaaactatgt |
604 |
Q |
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| T |
867149 |
gatttctaaattagtttatgtttaatgtaatgttgggtgacagattaagattatattagactttatgatttgcaaataacatttttatttaaaattatgt |
867248 |
T |
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| Q |
605 |
tgtttcacaaacatttatcatatgcgttgtacttac-ggataaacaattttactactatgatcaaaagcaaacatgcatcaaactgtaattaatagtttt |
703 |
Q |
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| T |
867249 |
cgtttcacaaacatttatcatatgcgttgtacttacaggatacacaattttaccactatgatcaaaagcaaacatgcatcaaactgtaattaatagtttt |
867348 |
T |
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| Q |
704 |
gctatcaa |
711 |
Q |
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| T |
867349 |
ggtatcaa |
867356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 762
Target Start/End: Original strand, 867376 - 867407
Alignment:
| Q |
731 |
cgcaaattttgttagaagaaaacaagctagta |
762 |
Q |
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| T |
867376 |
cgcaaattttgttagaagaaaacaagctagta |
867407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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