View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4746-Insertion-9 (Length: 722)

Name: NF4746-Insertion-9
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4746-Insertion-9
NF4746-Insertion-9
[»] chr3 (6 HSPs)
chr3 (8-722)||(51295315-51296028)
chr3 (300-352)||(25252042-25252094)
chr3 (300-335)||(24478539-24478574)
chr3 (289-327)||(2990978-2991016)
chr3 (303-352)||(29208267-29208316)
chr3 (301-338)||(43307635-43307672)
[»] chr6 (6 HSPs)
chr6 (300-367)||(21869850-21869917)
chr6 (272-367)||(2766853-2766948)
chr6 (300-365)||(9163745-9163810)
chr6 (308-352)||(770344-770388)
chr6 (300-352)||(2732938-2732990)
chr6 (300-338)||(2457232-2457270)
[»] chr4 (6 HSPs)
chr4 (301-367)||(415132-415198)
chr4 (272-338)||(34581595-34581661)
chr4 (520-571)||(46011954-46012005)
chr4 (300-367)||(4145260-4145327)
chr4 (300-367)||(25402827-25402894)
chr4 (300-362)||(12909632-12909694)
[»] chr1 (7 HSPs)
chr1 (272-352)||(6025949-6026029)
chr1 (299-367)||(12132090-12132158)
chr1 (300-350)||(28059234-28059284)
chr1 (523-577)||(40475-40529)
chr1 (300-362)||(15955885-15955947)
chr1 (534-572)||(45580762-45580800)
chr1 (300-372)||(37129080-37129153)
[»] chr7 (5 HSPs)
chr7 (300-367)||(38622886-38622953)
chr7 (300-372)||(2219532-2219604)
chr7 (300-367)||(25268805-25268872)
chr7 (292-337)||(1109348-1109393)
chr7 (300-365)||(39417751-39417816)
[»] chr5 (3 HSPs)
chr5 (301-367)||(34156643-34156709)
chr5 (300-330)||(35713285-35713315)
chr5 (290-343)||(4787923-4787976)
[»] chr8 (4 HSPs)
chr8 (522-569)||(10428752-10428799)
chr8 (300-367)||(34862898-34862965)
chr8 (300-346)||(31809777-31809823)
chr8 (300-369)||(43876538-43876607)
[»] chr2 (1 HSPs)
chr2 (291-352)||(41631882-41631943)


Alignment Details
Target: chr3 (Bit Score: 687; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 8 - 722
Target Start/End: Complemental strand, 51296028 - 51295315
Alignment:
Q  8 ggtattgctgctggttcttatcacactcttgctcttgcaggttcactaacacttcatacctttctaattttctctttcaattttacaactgcattacctc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51296028 ggtattgctgctggttcttatcacactcttgctcttgcaggttcactaacacttcacacctttctaattttctctttcaattttacaactgcattacctc 51295929  T
Q  108 atcaaggtgtaatttttattttcattgttattcttgttgcatattgataaggctaatgccaattcataaattgtcacatatagttggaaatttgttatat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295928 atcaaggtgtaatttttattttcattgttattcttgttgcatattgataaggctaatgccaattcataaattgtcacatatagttggaaatttgttatat 51295829  T
Q  208 ttgtgttgccaaacgcggattgcgcaaaatagtaatttgttcaaattatgatgtgcaatagtactgctatagagcaactatggccactactcgacaacat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295828 ttgtgttgccaaacgcggattgcgcaaaatagtaatttgttcaaattatgatgtgcaatagtactgctatagagcaactatggccactactcgacaacat 51295729  T
Q  308 tttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctataacgctatggttccgctacacccgatatttaataacattgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295728 tttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctataacgctatggttccgctacacccgatatttaataacattgt 51295629  T
Q  408 gttagatatatttggagtttgataatgatagttaaaagttggttagtatttgttgcaactaagtttagatttgttagtttaagttacgatcactctataa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  51295628 gttagatatatttggagtttgataatgatagttaaaagttggttagtatttgttgcaactaagttaagatttgttggtttaagttacgatcactatataa 51295529  T
Q  508 agtatgtcctactcctacactgattataatcaacttttctcattttatcaatttcaaataatcaaactttgttgggctctatcatgcttctcaacagaca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295528 agtatgtcctactcctacactgattataatcaacttttctcattttatcaatttcaaataatcaaactttgttgggctctatcatgcttctcaacagaca 51295429  T
Q  608 aagaatactagaaacatgttctttgttatcgcttaaatctcatgagtcaatgtgacatttgaccttatgatagagcccatatgctttaatattaaacata 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51295428 aagaatactagaaacatgttctttgttatcgcttaaatctcatgagtcaatgtgacatttgaccttatgatagagcccatatgctttaatatt-aacata 51295330  T
Q  708 accttttttatcaag 722  Q
    || ||||||||||||    
T  51295329 acattttttatcaag 51295315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 25252094 - 25252042
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 352  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  25252094 gacaacattttgtactaaatagcgtatcacgaaacaagagcgatttgttcaaa 25252042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 24478574 - 24478539
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaaca 335  Q
    |||||||||||||||||||||||| |||||||||||    
T  24478574 gacaacattttgtactaaatagcgaatcacgaaaca 24478539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 2990978 - 2991016
Alignment:
Q  289 ggccactactcgacaacattttgtactaaatagcgtatc 327  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  2990978 ggccactatttgacaacattttgtactaaatagcgtatc 2991016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 29208316 - 29208267
Alignment:
Q  303 aacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 352  Q
    |||||||||||||||| ||||||||  | ||||||||||||||| |||||    
T  29208316 aacattttgtactaaacagcgtatcgtggaacaataacgatttgttcaaa 29208267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 43307635 - 43307672
Alignment:
Q  301 acaacattttgtactaaatagcgtatcacgaaacaata 338  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  43307635 acaacattttgtactaaacagcgtatcacaaaacaata 43307672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 21869917 - 21869850
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||| || || ||||||||||||||    
T  21869917 gacaacattttgtactaaatagtgtatcacggaacaataatgatttgttcgaattctgctacgctata 21869850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 2766948 - 2766853
Alignment:
Q  272 tgctatagagcaactatggccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    |||||||| ||  ||||||| |||| | ||||| ||||| ||||||||| ||||||||  |||||||  |||||| |||||| |||||||||||||    
T  2766948 tgctatagtgcttctatggctactatttgacaatattttatactaaataacgtatcacataacaatagagatttgttcaaaccctgctacgctata 2766853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 9163810 - 9163745
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgcta 365  Q
    ||||||||||||||||||||||||||| ||| |||||||  |||||| ||||| | | ||||||||    
T  9163810 gacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatttttctacgcta 9163745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 770388 - 770344
Alignment:
Q  308 tttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 352  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||    
T  770388 tttgtactaaatagcgtatcacggaacaataccgatttgttcaaa 770344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 2732990 - 2732938
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 352  Q
    ||||||||||||||||||||||| |||| | |||||||| ||||||| |||||    
T  2732990 gacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 2732938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 2457270 - 2457232
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaata 338  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  2457270 gacaacattttgtactaaatagcatatcacaaaacaata 2457232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 415198 - 415132
Alignment:
Q  301 acaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||| ||||| ||||||| ||||||    
T  415198 acaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctata 415132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 34581661 - 34581595
Alignment:
Q  272 tgctatagagcaactatggccactactcgacaacattttgtactaaatagcgtatcacgaaacaata 338  Q
    |||||||| || ||||| ||| ||| | ||||||||||||||||||||||||||||||| |||||||    
T  34581661 tgctatagcgctactatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaata 34581595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 46012005 - 46011954
Alignment:
Q  520 tcctacactgattataatcaacttttctcattttatcaatttcaaataatca 571  Q
    ||||| ||| ||| |||||||||||||| |||||||||||||||||||||||    
T  46012005 tcctatactcattgtaatcaacttttcttattttatcaatttcaaataatca 46011954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 4145260 - 4145327
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    |||||||||||||||| ||||||||||   | ||||||||| ||||| ||||| ||||||| ||||||    
T  4145260 gacaacattttgtactgaatagcgtatggtggaacaataacaatttgttcaaattctgctatgctata 4145327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 25402894 - 25402827
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    |||||||||||||| || ||| |||||||  |||||||| |||| || ||||| ||||||||||||||    
T  25402894 gacaacattttgtattacatatcgtatcattaaacaatagcgatctgttcaaattctgctacgctata 25402827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 12909632 - 12909694
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacg 362  Q
    ||||||| ||| ||||||||||||| ||||  ||||||| ||||| | |||||||||||||||    
T  12909632 gacaacaatttatactaaatagcgtgtcacataacaatagcgattggttcaaactctgctacg 12909694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 6025949 - 6026029
Alignment:
Q  272 tgctatagagcaactatggccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 352  Q
    |||||||| ||  |||| ||||||| | ||||||||||||||||||||||| |||| || ||||||||| ||||| |||||    
T  6025949 tgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaa 6026029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 12132090 - 12132158
Alignment:
Q  299 cgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    |||||||| |||||||||||||||||||||  ||||||||| || ||||||||| || ||| |||||||    
T  12132090 cgacaacactttgtactaaatagcgtatcataaaacaataatgacttgatcaaattccgcttcgctata 12132158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 28059284 - 28059234
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatca 350  Q
    |||||||||||||||| |||||||||||||  ||||||| |||||||||||    
T  28059284 gacaacattttgtactcaatagcgtatcacagaacaatatcgatttgatca 28059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 577
Target Start/End: Original strand, 40475 - 40529
Alignment:
Q  523 tacactgattataatcaacttttctcattttatcaatttcaaataatcaaacttt 577  Q
    |||||| ||| |||||||||||||||||| |||| ||| ||||||||||| ||||    
T  40475 tacactcattgtaatcaacttttctcattctatctattccaaataatcaatcttt 40529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 15955947 - 15955885
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacg 362  Q
    ||||||||||||| |||||||| |||||||  ||||| ||||||||| ||||| ||| |||||    
T  15955947 gacaacattttgtcctaaatagtgtatcacataacaagaacgatttgttcaaattctactacg 15955885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 572
Target Start/End: Complemental strand, 45580800 - 45580762
Alignment:
Q  534 taatcaacttttctcattttatcaatttcaaataatcaa 572  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  45580800 taatcaacttttctcattctatcgatttcaaataatcaa 45580762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 37129153 - 37129080
Alignment:
Q  300 gacaacattttgtactaaatagcgtat-cacgaaacaataacgatttgatcaaactctgctacgctataacgct 372  Q
    ||||||||||||||||| ||||| ||  |||| |||||||  |||||| ||||| |||||||||||||| ||||    
T  37129153 gacaacattttgtactatatagcataaacacggaacaatagtgatttgttcaaattctgctacgctatagcgct 37129080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 38622886 - 38622953
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    ||||||||||||| |||||||| |||||| | ||||||| ||||||  ||||| ||||||||||||||    
T  38622886 gacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgctacgctata 38622953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 2219532 - 2219604
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctataacgct 372  Q
    ||||| ||||||||||||||||| |||||   |||||||||||| || ||||| ||| |||| ||||||||||    
T  2219532 gacaatattttgtactaaatagcatatcagagaacaataacgatatgttcaaattctactacactataacgct 2219604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 25268872 - 25268805
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    ||||| ||||| |||||||||| ||||  |  ||||||||||||||| ||||| ||||||||||||||    
T  25268872 gacaatattttatactaaatagtgtatagcagaacaataacgatttgttcaaattctgctacgctata 25268805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 1109348 - 1109393
Alignment:
Q  292 cactactcgacaacattttgtactaaatagcgtatcacgaaacaat 337  Q
    ||||||| |||||||||||||||||||||| ||||| || ||||||    
T  1109348 cactacttgacaacattttgtactaaatagtgtatcgcggaacaat 1109393  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 39417816 - 39417751
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgcta 365  Q
    ||||||||||||||||| ||||| |||| || |||||||  |||||| ||||| |||| |||||||    
T  39417816 gacaacattttgtactatatagcatatcgcggaacaatagtgatttgttcaaattctgttacgcta 39417751  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 34156709 - 34156643
Alignment:
Q  301 acaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    ||||||||||| |||||||||||||||||| | ||| | ||||| | ||||| ||||||||||||||    
T  34156709 acaacattttgcactaaatagcgtatcacggagcaaaagcgattagttcaaattctgctacgctata 34156643  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 35713315 - 35713285
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacg 330  Q
    |||||||||||||||||||||||||||||||    
T  35713315 gacaacattttgtactaaatagcgtatcacg 35713285  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 4787976 - 4787923
Alignment:
Q  290 gccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgat 343  Q
    ||||||| | |||||||||||||||||||||| ||||||  | |||||||||||    
T  4787976 gccactatttgacaacattttgtactaaatagtgtatcattagacaataacgat 4787923  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 569
Target Start/End: Original strand, 10428752 - 10428799
Alignment:
Q  522 ctacactgattataatcaacttttctcattttatcaatttcaaataat 569  Q
    ||||||| ||| ||||||| |||| |||||||||||||||||||||||    
T  10428752 ctacactcattgtaatcaagttttttcattttatcaatttcaaataat 10428799  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 34862965 - 34862898
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 367  Q
    ||||||||||||||||| ||||||||||  | | ||||| || ||||  |||||||||||||||||||    
T  34862965 gacaacattttgtactatatagcgtatcgtggagcaatagcggtttgtccaaactctgctacgctata 34862898  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 31809823 - 31809777
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttg 346  Q
    ||||||||||||||||||||||||||| | ||||||| |||| ||||    
T  31809823 gacaacattttgtactaaatagcgtatgaagaaacaacaacggtttg 31809777  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 43876607 - 43876538
Alignment:
Q  300 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctataac 369  Q
    ||||||| | |||||||||||||||||||  |||||||| ||| | | ||||| || |||||||||||||    
T  43876607 gacaacactctgtactaaatagcgtatcataaaacaatatcgactaggtcaaaatccgctacgctataac 43876538  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 41631882 - 41631943
Alignment:
Q  291 ccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 352  Q
    |||||| ||||||||| || |||||||||||| |||||| |||||||| | ||||| |||||    
T  41631882 ccactattcgacaacacttcgtactaaatagcatatcacaaaacaatagcaatttgttcaaa 41631943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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