View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_high_1 (Length: 561)
Name: NF4746_high_1
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 35397309 - 35397856
Alignment:
| Q |
1 |
cttttgatgtacgagagtcaatgagtgtgcactgtgggtatgctttgctttttctaggaattcatcccttacttatatctatacttacctagggaagtcc |
100 |
Q |
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| T |
35397309 |
cttttgatgtacgagagtcaatgagtgtgcactgtgggtatgttttgctttttctaggaattcatcccttacttatatctatacttacctagggaagtcc |
35397408 |
T |
|
| Q |
101 |
ttggtgacaactgtgtgcatgctagtaatgaagcaatgctgtgtacatttttactgatatgaatcattccccccatcgtcaattatgtgtgtgcgcatca |
200 |
Q |
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| T |
35397409 |
ttggtgacaactgtgtgcatgctagtaatgaagcaatgctgtgtacatttttactgatatgaatcattccccccatcgtcaattatgtgtgtgcgcatca |
35397508 |
T |
|
| Q |
201 |
atcagatttgtaagaggaactaaacctggccgcaacacaggatttgacattgatgaagacgaccttcttgaaatggatcagtgtaatggagtggttgttg |
300 |
Q |
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| T |
35397509 |
atcagatttgtaagaggaactaaacctggccgcaacacaggatttgacattgatgaagacgaccttcttgaaatggatcagtgtaatggagtggttgttg |
35397608 |
T |
|
| Q |
301 |
catcagctatattcggtttgtattatgtgacttctgcctttatttacttgttttgaagctagttactgattataattatatttactattcaggaaatttt |
400 |
Q |
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| T |
35397609 |
catcagctatatttggtttgtattatgtgatttctgcctttatttacttgttttgaagctagttactgattataattatatttactattcaggaaatttt |
35397708 |
T |
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| Q |
401 |
gatgagataaatgagccaaaaaatataagtgattattcggggaagactgtatgcttccttatgtttgtagatgaagaaacagaaaaatacctgaggggtt |
500 |
Q |
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| T |
35397709 |
gacgagataaatgagccaaaaaatataagtgattattcggggaagactgtatgcttccttatgtttgtagatgaagaaacagaaaaatacctgaggggtt |
35397808 |
T |
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| Q |
501 |
ctggcaggctgggaatcagcaagaagattggtttgtggagagttattg |
548 |
Q |
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| T |
35397809 |
ctggcaggctgggaatcagcaagaagattggtttgtggagagttattg |
35397856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 196 - 548
Target Start/End: Complemental strand, 3730422 - 3730068
Alignment:
| Q |
196 |
catcaatcagatttgtaagaggaactaaacctggccgcaacacaggatttgacattgatgaagacgaccttcttgaaatggatcagtgtaatggagtggt |
295 |
Q |
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||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || || | || | || |
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| T |
3730422 |
catcattcagatttgttagaggaattaaacctggccgcaacacaggatttgacatagatgaagacgacctccttgatatggagcaatgccagggcatagt |
3730323 |
T |
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| Q |
296 |
tgttgcatcagctatattcggtttgtattatgtgacttctgcctttatttacttgttttgaagctagttactg--attat-aattatatttactattcag |
392 |
Q |
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||||||||||||| |||| ||| |||||||| || |||||| |||||||| || | | || || || ||| || || ||||| || | | ||||| |
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| T |
3730322 |
tgttgcatcagctgtatttggtctgtattatatggtttctgcttttatttaattttgcttaatcttgt-actttcatgatgaattaaatctcttgttcag |
3730224 |
T |
|
| Q |
393 |
gaaattttgatgagataaatgagccaaaaaatataagtgattattcggggaagactgtatgcttccttatgtttgtagatgaagaaacagaaaaatacct |
492 |
Q |
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|||||||||||||| |||||||||||||||| ||||| || |||| | ||||||| |||||||||||||||||||| ||||||||||||||||| || |
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| T |
3730223 |
gaaattttgatgaggtaaatgagccaaaaaacataagcgagcattcaaagcagactgtgtgcttccttatgtttgtagacgaagaaacagaaaaatatct |
3730124 |
T |
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| Q |
493 |
gaggggttctggcaggctgggaatcagcaagaagattggtttgtggagagttattg |
548 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| |||||| |||||| |
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| T |
3730123 |
gaggagttctggcaggctgggaaccagcaagaagattggtttatggagaattattg |
3730068 |
T |
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