View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4746_high_15 (Length: 242)

Name: NF4746_high_15
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4746_high_15
NF4746_high_15
[»] chr7 (6 HSPs)
chr7 (1-223)||(14652795-14653017)
chr7 (2-224)||(14661229-14661451)
chr7 (68-220)||(14627381-14627533)
chr7 (2-224)||(14757970-14758192)
chr7 (2-224)||(14750048-14750270)
chr7 (112-220)||(14765240-14765348)
[»] chr5 (6 HSPs)
chr5 (1-224)||(17690735-17690958)
chr5 (2-223)||(17683810-17684031)
chr5 (68-220)||(17701960-17702112)
chr5 (2-224)||(17570343-17570565)
chr5 (112-220)||(17563251-17563359)
chr5 (1-64)||(17622018-17622081)
[»] chr1 (4 HSPs)
chr1 (13-208)||(15195587-15195782)
chr1 (13-208)||(15216005-15216200)
chr1 (13-192)||(15196238-15196417)
chr1 (13-192)||(15216656-15216835)
[»] chr8 (1 HSPs)
chr8 (1-184)||(24395549-24395732)
[»] scaffold1961 (1 HSPs)
scaffold1961 (99-192)||(22-115)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14653017 - 14652795
Alignment:
Q  1 ctctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653017 ctctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattc 14652918  T
Q  101 agctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652917 agctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtta 14652818  T
Q  201 acatcttccccggcacgctcctt 223  Q
    |||||||||||||||||||||||    
T  14652817 acatcttccccggcacgctcctt 14652795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 14661451 - 14661229
Alignment:
Q  2 tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca 101  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||| | |||| |||||||||||  |||||||||||||||||||||    
T  14661451 tctatccgtttcctcagtcaggcacctctcaactttcttgagataatcctcgcagtcacagcactcaatatatttctcagattcagccttgtaagattca 14661352  T
Q  102 gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  14661351 gctaaaacttgcagaaaaggagtctcaaattcttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgttaa 14661252  T
Q  202 catcttccccggcacgctccttg 224  Q
    |||||||||||||||||||||||    
T  14661251 catcttccccggcacgctccttg 14661229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 68 - 220
Target Start/End: Complemental strand, 14627533 - 14627381
Alignment:
Q  68 aatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagc 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  14627533 aatatatttatgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagc 14627434  T
Q  168 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14627433 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctc 14627381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 14757970 - 14758192
Alignment:
Q  2 tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca 101  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||| | ||||  ||| ||||||| ||||||||| ||||  | |||    
T  14757970 tctatctgtttcctcattcaggcacctctcaactttcttgagataatcaccgcaatcacagcactcgataaatttctgagattcagccctgtagaactca 14758069  T
Q  102 gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa 201  Q
    ||| ||||||| ||||| | |||||| ||| ||||||| |||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| | ||||    
T  14758070 gctgaaacttgtagaaacgaagtctcgaattcttgctcttaaacagaagaacctaaatccattagcatctttgtaatatttttaatcagttctatattaa 14758169  T
Q  202 catcttccccggcacgctccttg 224  Q
    |||||||||| ||||| ||||||    
T  14758170 catcttccccagcacgttccttg 14758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 14750048 - 14750270
Alignment:
Q  2 tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca 101  Q
    |||||| |||||||||||||| |   |  |||||||||||| |||||| || || ||| || | | || | ||||||||||||||||| | ||  | |||    
T  14750048 tctatctgtttcctcattcagccgctttgcaactttcttgaaataatcaccgcaatcagaaaaatcaacaaatttctgggattcagccctatagaactca 14750147  T
Q  102 gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa 201  Q
    ||| ||||||| | |||||||||||||||| ||| |||||||||| | |||||||||||||| ||||||||||  | |||||||||| ||||||| ||||    
T  14750148 gctgaaacttgtaaaaaaggagtctcaaattcttcctcataaacaaagggacctaaatccattagcatctttgatagatttctaatcggttctctattaa 14750247  T
Q  202 catcttccccggcacgctccttg 224  Q
    |||||||| | ||| ||||||||    
T  14750248 catcttccgcagcatgctccttg 14750270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 14765240 - 14765348
Alignment:
Q  112 gcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttcccc 211  Q
    ||||||||||| |||||||| ||| ||||||||| |||||||||  ||| || ||||||||||| | | ||||||||||| |||| |||||| |||| ||    
T  14765240 gcagaaaaggattctcaaattcttcctcataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagtcctctattaacaacttcgcc 14765339  T
Q  212 ggcacgctc 220  Q
    |||||||||    
T  14765340 ggcacgctc 14765348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17690735 - 17690958
Alignment:
Q  1 ctctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattc 100  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690735 ctctatccgtttcctcattcaagcacctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattc 17690834  T
Q  101 agctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  17690835 agctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgtta 17690934  T
Q  201 acatcttccccggcacgctccttg 224  Q
    ||||||||||||||||||||||||    
T  17690935 acatcttccccggcacgctccttg 17690958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 17683810 - 17684031
Alignment:
Q  2 tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  17683810 tctatccgtttcctcattcaggcacctctcaactttcttgagataatccccgcagtcacaacactcgatatatttctcggattcagccttgtaagattca 17683909  T
Q  102 gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  17683910 gctaaaacttgcagaaaaggagtctcaaattcttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgttaa 17684009  T
Q  202 catcttccccggcacgctcctt 223  Q
    ||||||||||||||| ||||||    
T  17684010 catcttccccggcacactcctt 17684031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 17701960 - 17702112
Alignment:
Q  68 aatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagc 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  17701960 aatatatttatgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagc 17702059  T
Q  168 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17702060 atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctc 17702112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 17570565 - 17570343
Alignment:
Q  2 tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca 101  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||| | ||||  ||| ||||||| ||||||||| ||||  | |||    
T  17570565 tctatctgtttcctcattcaggcacctctcaactttcttgagataatcaccgcaatcacagcactcgataaatttctgagattcagccctgtagaactca 17570466  T
Q  102 gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa 201  Q
    ||| ||||||| ||||| | |||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| | ||||    
T  17570465 gctgaaacttgtagaaacgaagtctcgaattcttgctcataaacagaagaacctaaatccattagcatctttgtaatatttttaatcagttctatattaa 17570366  T
Q  202 catcttccccggcacgctccttg 224  Q
    |||||||||| ||||| ||||||    
T  17570365 catcttccccagcacgttccttg 17570343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 17563359 - 17563251
Alignment:
Q  112 gcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttcccc 211  Q
    ||||||||||| |||||||| ||| | ||||||| |||||||||  ||| || ||||||||||| | | ||||||||||| |||| |||||| |||| ||    
T  17563359 gcagaaaaggattctcaaattcttccccataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagtcctctattaacaacttcgcc 17563260  T
Q  212 ggcacgctc 220  Q
    |||||||||    
T  17563259 ggcacgctc 17563251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17622018 - 17622081
Alignment:
Q  1 ctctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaaca 64  Q
    ||||||||  |||||||||||| |  |||||| |||||||||||||||||||||| ||| ||||    
T  17622018 ctctatccaattcctcattcagccgcctctcagctttcttgagataatccccacaatcacaaca 17622081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 15195587 - 15195782
Alignment:
Q  13 cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg 112  Q
    ||||||||||||   ||||| | |||||||||||||||||||| ||| | |||| |||| ||||||| |||||||||  |||  | || |||  ||  ||    
T  15195587 cctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagcccggtagaactcggctggaagctg 15195686  T
Q  113 cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttc 208  Q
    |||||||||| |||||||| ||||| ||||||| ||||| ||||||||||| ||||| ||||| | ||||||||||| || | |||||||| ||||    
T  15195687 cagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcacttttatgttaacaacttc 15195782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 15216005 - 15216200
Alignment:
Q  13 cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg 112  Q
    ||||||||||||   ||||| | |||||||||||||||||||| ||| | |||| |||| ||||||| |||||||||  |||  | || |||  ||  ||    
T  15216005 cctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagcccggtagaactcggctggaagctg 15216104  T
Q  113 cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttc 208  Q
    |||||||||| |||||||| ||||| ||||||| ||||| ||||||||||| ||||| ||||| | ||||||||||| || | |||||||| ||||    
T  15216105 cagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcacttttatgttaacaacttc 15216200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 15196238 - 15196417
Alignment:
Q  13 cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg 112  Q
    ||||||||||||   ||||| | ||||| |||||||||||||| ||| | | || |||  ||||||| |||||||||  |||  | |||||| |||||||    
T  15196238 cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg 15196337  T
Q  113 cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagtt 192  Q
    ||| |||||| |||||||| |||||  |||||| ||||||||||||||||| ||||| ||||| | || |||||||||||    
T  15196338 cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagtt 15196417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 15216656 - 15216835
Alignment:
Q  13 cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg 112  Q
    ||||||||||||   ||||| | ||||| |||||||||||||| ||| | | || |||  ||||||| |||||||||  |||  | |||||| |||||||    
T  15216656 cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg 15216755  T
Q  113 cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagtt 192  Q
    ||| |||||| |||||||| |||||  |||||| ||||||||||||||||| ||||| ||||| | || |||||||||||    
T  15216756 cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagtt 15216835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 24395549 - 24395732
Alignment:
Q  1 ctctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattc 100  Q
    |||||||| ||||||||||||| |  || ||| ||||||| |||||||| ||||| ||| |||||| |||  || | ||||||||  |||  ||| | ||    
T  24395549 ctctatccatttcctcattcagacgcctttcagctttcttaagataatcaccacaatcacaacactcaatgaatctttgggattctacctgataaaactc 24395648  T
Q  101 agctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttct 184  Q
    |||| ||||||| |||||| ||| ||||||  ||||  |||||||||  |||||||||||||| ||||| ||||| | ||||||    
T  24395649 agctgaaacttgaagaaaatgagcctcaaaatcttgaccataaacagctggacctaaatccattagcatttttgttatatttct 24395732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1961 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1961
Description:

Target: scaffold1961; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 22 - 115
Alignment:
Q  99 tcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagtt 192  Q
    |||||| |||||||||| |||||| |||||||| |||||  |||||| ||||||||||||||||| ||||| || || |  |||||||||||||    
T  22 tcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatattcgttatttttctaatcagtt 115  T

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