View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4746_high_2 (Length: 382)

Name: NF4746_high_2
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4746_high_2
NF4746_high_2
[»] chr6 (5 HSPs)
chr6 (1-185)||(2471646-2471830)
chr6 (186-306)||(6608385-6608505)
chr6 (189-247)||(6606653-6606711)
chr6 (186-247)||(6607605-6607666)
chr6 (186-244)||(29429500-29429558)
[»] chr5 (10 HSPs)
chr5 (1-185)||(8981076-8981260)
chr5 (189-335)||(38943090-38943240)
chr5 (186-318)||(19033580-19033712)
chr5 (223-318)||(37922737-37922832)
chr5 (185-306)||(19033103-19033225)
chr5 (186-306)||(37923425-37923546)
chr5 (191-306)||(2332263-2332379)
chr5 (186-306)||(38943594-38943719)
chr5 (186-247)||(2331443-2331504)
chr5 (186-244)||(10361047-10361105)
[»] chr1 (15 HSPs)
chr1 (1-160)||(573972-574132)
chr1 (186-335)||(33659860-33660013)
chr1 (184-335)||(28283758-28283913)
chr1 (186-275)||(26244444-26244533)
chr1 (190-308)||(37335008-37335126)
chr1 (186-284)||(50616003-50616102)
chr1 (186-284)||(50623831-50623930)
chr1 (187-247)||(4426247-4426307)
chr1 (186-262)||(10891688-10891764)
chr1 (223-318)||(50615097-50615190)
chr1 (223-318)||(50622925-50623018)
chr1 (214-288)||(28284552-28284627)
chr1 (186-244)||(47213884-47213942)
chr1 (47-85)||(47683501-47683539)
chr1 (188-244)||(45813229-45813284)
[»] chr4 (14 HSPs)
chr4 (1-185)||(27134844-27135029)
chr4 (186-318)||(29893837-29893969)
chr4 (186-335)||(33394914-33395067)
chr4 (186-335)||(50646530-50646683)
chr4 (186-318)||(48542310-48542442)
chr4 (186-306)||(33394459-33394580)
chr4 (188-318)||(44087987-44088117)
chr4 (191-306)||(40260572-40260688)
chr4 (186-306)||(29893343-29893464)
chr4 (186-306)||(50646058-50646177)
chr4 (186-288)||(48541396-48541499)
chr4 (12-102)||(11322347-11322437)
chr4 (235-289)||(43323536-43323590)
chr4 (188-247)||(43326037-43326096)
[»] chr3 (18 HSPs)
chr3 (201-335)||(13648427-13648561)
chr3 (186-318)||(10030479-10030611)
chr3 (186-335)||(51800951-51801105)
chr3 (186-335)||(27042985-27043137)
chr3 (186-335)||(46416033-46416186)
chr3 (186-306)||(10029994-10030115)
chr3 (186-306)||(10257717-10257838)
chr3 (211-335)||(38507781-38507909)
chr3 (186-306)||(10181347-10181468)
chr3 (186-306)||(10124915-10125036)
chr3 (186-306)||(51801429-51801550)
chr3 (185-246)||(13647689-13647750)
chr3 (193-306)||(33464155-33464269)
chr3 (185-287)||(38506981-38507084)
chr3 (188-247)||(27043912-27043971)
chr3 (189-247)||(33464956-33465014)
chr3 (190-244)||(34266839-34266893)
chr3 (188-244)||(46961671-46961727)
[»] chr8 (5 HSPs)
chr8 (186-318)||(43139149-43139281)
chr8 (186-318)||(21570910-21571042)
chr8 (186-306)||(21570416-21570537)
chr8 (186-244)||(42840446-42840504)
chr8 (184-244)||(45376207-45376267)
[»] chr7 (6 HSPs)
chr7 (186-318)||(7475025-7475157)
chr7 (189-335)||(28870317-28870467)
chr7 (185-335)||(47514338-47514484)
chr7 (186-306)||(28869836-28869961)
chr7 (186-306)||(47513543-47513664)
chr7 (186-247)||(44185801-44185862)
[»] chr2 (7 HSPs)
chr2 (185-335)||(38825873-38826027)
chr2 (192-318)||(40133670-40133796)
chr2 (185-306)||(1156131-1156253)
chr2 (186-260)||(1156930-1157004)
chr2 (186-260)||(2283628-2283702)
chr2 (223-306)||(2285557-2285641)
chr2 (186-247)||(40129171-40129232)
[»] scaffold0022 (1 HSPs)
scaffold0022 (186-318)||(60341-60473)
[»] scaffold0072 (2 HSPs)
scaffold0072 (186-306)||(16237-16357)
scaffold0072 (184-247)||(17041-17104)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 2471830 - 2471646
Alignment:
Q  1 atgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagta 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471830 atgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagta 2471731  T
Q  101 acaccagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctcnnnnnnngcctgttctgtttatgag 185  Q
    |||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||       ||||||||||||||||||    
T  2471730 acagtagtagcaaagagacagaagcggtggccttgtcttttttgaggcataggtggtctctttttttgcctgttctgtttatgag 2471646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 6608505 - 6608385
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||| ||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| || |||  |||||||||| ||||||||||| ||||||    
T  6608505 ggcgggttttagcatgggacaattgttaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctacattttatattccaattt 6608406  T
Q  286 ataaccctattcaattataat 306  Q
    ||| | ||||| |||||||||    
T  6608405 atagctctatttaattataat 6608385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 6606653 - 6606711
Alignment:
Q  189 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  6606653 gagttttagcatggggcaattgtgaaattgccccaacttagatcaattttgttttattt 6606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 6607605 - 6607666
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  6607605 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 6607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 29429558 - 29429500
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    |||||||||||||||| |  |||||| ||||| ||| ||||||||||||||||||||||    
T  29429558 ggcgagttttagcatgagcaaattgtcaaatttccccatcttagatcaattttgtttta 29429500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 8981076 - 8981260
Alignment:
Q  1 atgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagta 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8981076 atgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagta 8981175  T
Q  101 acaccagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctcnnnnnnngcctgttctgtttatgag 185  Q
    |||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||       ||||||||||||||||||    
T  8981176 acagtagtagcaaagagacagaagcggtggccttgtcttttttgaggcataggtggtctctttttttgcctgttctgtttatgag 8981260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 38943090 - 38943240
Alignment:
Q  189 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 288  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  38943090 gagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 38943189  T
Q  289 accctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
T  38943190 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 38943240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 19033712 - 19033580
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  19033712 ggcgagttttagcatggagcaattgtgaaattgtcccatcttagatcaattttattttatttgctgttacatgtacaccctacattttatatttcaattt 19033613  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    |||| |||| |||||||||||||||||||||||    
T  19033612 ataatcctactcaattataatttgactcaaatt 19033580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 37922737 - 37922832
Alignment:
Q  223 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 318  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  37922737 atcttagatcaattttgttttatttgctgttatatgtacaccctgcattttatatttcaatttatagtcctactcaattataatttgactcaaatt 37922832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 19033103 - 19033225
Alignment:
Q  185 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaat 283  Q
    ||||||||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||| || |||  ||||||||||| | |||||||||| |||    
T  19033103 gggcgagttttagcaaggggcaattgtcaaactgccccatcttagatcaattttgttttatttgctattagttgtacatcctgtatttttatattttaat 19033202  T
Q  284 ttataaccctattcaattataat 306  Q
    |||||  | |||||| |||||||    
T  19033203 ttatagtcatattcatttataat 19033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 37923546 - 37923425
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||||||| |||||    
T  37923546 ggcgagttttagcatggggcaattgtcaaatttccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttatattccaatt 37923447  T
Q  285 tataaccctattcaattataat 306  Q
    |||| || |||| | |||||||    
T  37923446 tatagccatatttacttataat 37923425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 2332379 - 2332263
Alignment:
Q  191 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgc-attttatatttcaatttataa 289  Q
    ||||||||||||||||||||| ||||| | | |||||| |||||||||||||||||| || |||  |||||||||| | |||||||||| |||||||||     
T  2332379 gttttagcatggggcaattgttaaattgctccatcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatattccaatttatag 2332280  T
Q  290 ccctattcaattataat 306  Q
    | ||||| |||||||||    
T  2332279 ctctatttaattataat 2332263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 38943719 - 38943594
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 280  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||     |||  |||||||| |||| ||||||||| |    
T  38943719 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattaattaattgtacatcttgcatttttatattcc 38943620  T
Q  281 aatttataaccctattcaattataat 306  Q
    |||||||| || |||||| |||||||    
T  38943619 aatttatagccatattcatttataat 38943594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 2331443 - 2331504
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  2331443 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 2331504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 10361105 - 10361047
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    ||||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
T  10361105 ggcgagttttagcatgggcaaattgtcaaattttcccatcttagatcaattttgtttta 10361047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 574132 - 573972
Alignment:
Q  1 atgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttat-aagatgcctagt 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  574132 atgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataaagatgcctagt 574033  T
Q  100 aacaccagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctc 160  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  574032 aacagtagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctc 573972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 33660013 - 33659860
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||    
T  33660013 ggcgagttttagcatggggcaattgtgaaattgcccaatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaattt 33659914  T
Q  286 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
    ||||||||| ||||||||||||||| |||    |||||||||||||||||||||    
T  33659913 ataaccctactcaattataatttgattcaaattaatttacttgtaaatacatta 33659860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 184 - 335
Target Start/End: Original strand, 28283758 - 28283913
Alignment:
Q  184 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaat 283  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||    
T  28283758 agggcgagttttagcatggggcaattgtgaaattgtcccatcttagatcaattttattttatttgttgttacatgtacatcctgcattttatattccaat 28283857  T
Q  284 ttataaccctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
    ||||| | ||| ||||||||||||||| |||    |||||||||||||||||||||    
T  28283858 ttatagctctactcaattataatttgattcaaattaatttacttgtaaatacatta 28283913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 26244533 - 26244444
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttat 275  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  26244533 ggcgagttttagcatggggtaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttat 26244444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 37335126 - 37335008
Alignment:
Q  190 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 289  Q
    ||||| |||||||||||||| | ||||| | | ||||||||||||||||||||||||| ||  ||||| |||||| |||||||||||||  ||||||||     
T  37335126 agtttcagcatggggcaattctcaaattgctccatcttagatcaattttgttttatttgctactacatatacatcatgcattttatattctaatttatag 37335027  T
Q  290 ccctattcaattataattt 308  Q
    |||||||||||||||||||    
T  37335026 ccctattcaattataattt 37335008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 50616102 - 50616003
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
T  50616102 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50616003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 50623930 - 50623831
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
T  50623930 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50623831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 4426247 - 4426307
Alignment:
Q  187 gcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||||||||||||| |||||||||  ||||||| | |||||||||||||||||||||||||    
T  4426247 gcgagttttagcatagggcaattgacaaattactccatcttagatcaattttgttttattt 4426307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 10891764 - 10891688
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtaca 262  Q
    |||| |||||||||||||||||| |  ||||| ||| |||||||||||||||||| |||| || | |||| ||||||    
T  10891764 ggcgggttttagcatggggcaatggaaaaatttccccatcttagatcaattttgtcttatctattattacttgtaca 10891688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 50615097 - 50615190
Alignment:
Q  223 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 318  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
T  50615097 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50615190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 50622925 - 50623018
Alignment:
Q  223 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 318  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
T  50622925 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50623018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 28284627 - 28284552
Alignment:
Q  214 aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttata 288  Q
    |||| ||| ||||||||||||||||||||||||| || |||  ||| || | |||| |||||||||||||||||||    
T  28284627 aattgccccatcttagatcaattttgttttatttgctattagctgtccaccttgcatttttatatttcaatttata 28284552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 47213884 - 47213942
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    ||||||||||||||||||  |||||| ||||| | | |||||| |||||||||||||||    
T  47213884 ggcgagttttagcatgggtaaattgtcaaatttctccatcttatatcaattttgtttta 47213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 47683501 - 47683539
Alignment:
Q  47 tcacatgcttgcaatatagtgagctaatgatggtggttt 85  Q
    |||||||||||| || |||||||||||||||||||||||    
T  47683501 tcacatgcttgcgatgtagtgagctaatgatggtggttt 47683539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 45813284 - 45813229
Alignment:
Q  188 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    ||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
T  45813284 cgagttttagcatgggtaaattgtcaaattttcc-atcttagatcaattttgtttta 45813229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27135029 - 27134844
Alignment:
Q  1 atgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagta 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27135029 atgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagta 27134930  T
Q  101 acaccagtagcaaagagacagaagcggtggccttatc-ttttttgaggcacaggtggtctcnnnnnnngcctgttctgtttatgag 185  Q
    |||  ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||       ||||||||||||||||||    
T  27134929 acagtagtagcaaagagacagaagcggtggccttgtctttttttgaggcataggtggtctctttttttgcctgttctgtttatgag 27134844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 29893969 - 29893837
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
T  29893969 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttattttatttgctgttacatttacatcctgcattttatatttcaattt 29893870  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    ||| || ||||||||||||||||||||||||||    
T  29893869 atagccttattcaattataatttgactcaaatt 29893837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 33395067 - 33394914
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
T  33395067 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattctaattt 33394968  T
Q  286 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  33394967 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 33394914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 50646683 - 50646530
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||  |||||    
T  50646683 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacaccctgtattttatattctaattt 50646584  T
Q  286 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
    |||  |||| |||||||||||||||||||    |||||||||||||||||||||    
T  50646583 atagtcctactcaattataatttgactcaaattaatttacttgtaaatacatta 50646530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 48542442 - 48542310
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||||||| | | | |||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||| ||||||    
T  48542442 ggcgagttttagcatggggcaattgtgaaactgctccatcttagatcaattttattttatttgctattatatgtacaccctgcattttatattccaattt 48542343  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    ||| ||||| ||||||||||||||| |||||||    
T  48542342 atagccctactcaattataatttgattcaaatt 48542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 33394459 - 33394580
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
T  33394459 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 33394558  T
Q  285 tataaccctattcaattataat 306  Q
    |||| || |||||| |||||||    
T  33394559 tatagccatattcatttataat 33394580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 44088117 - 44087987
Alignment:
Q  188 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttat 287  Q
    ||||||||| |||||||||||||| ||||| |   |||||||| ||||||||||||||||  |  |||||||||| |||||||||||||||  |||||||    
T  44088117 cgagttttaacatggggcaattgtcaaattgcttcatcttagaacaattttgttttatttgttactacatgtacaccctgcattttatattctaatttat 44088018  T
Q  288 aaccctattcaattataatttgactcaaatt 318  Q
    | ||||| |||||||||||||||||||||||    
T  44088017 agccctactcaattataatttgactcaaatt 44087987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 40260572 - 40260688
Alignment:
Q  191 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataa 289  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||  ||| || ||| || ||||||||| |||||||||     
T  40260572 gttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttactattagttgtccaccctacatttttatattccaatttatag 40260671  T
Q  290 ccctattcaattataat 306  Q
    || |||| | |||||||    
T  40260672 ccatatttatttataat 40260688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 29893343 - 29893464
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||| ||||| ||||||| ||||| | | |||||||||||||||||||||||||  | |||  ||||||||||||| ||||||||| |||||    
T  29893343 ggcgagttttagtatgggacaattgtcaaattgctccatcttagatcaattttgttttatttgttattaattgtacatcctgcatttttatattccaatt 29893442  T
Q  285 tataaccctattcaattataat 306  Q
    |||| || |||||| |||||||    
T  29893443 tatagccatattcatttataat 29893464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 50646058 - 50646177
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||| |||||  |||||||||||||| |||  ||||||||||| | |||||||||||||||    
T  50646058 ggcgagttttagcatggagcaattgtcaaattgccccatcttaaatcaa--ttgttttatttactattaattgtacatcctgtatttttatatttcaatt 50646155  T
Q  285 tataaccctattcaattataat 306  Q
    ||||  | |||||| |||||||    
T  50646156 tatagtcatattcatttataat 50646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 288
Target Start/End: Original strand, 48541396 - 48541499
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    ||||||||||||||||||  |||||| ||||| | | || ||||||||||||||||||||||| | |||  ||| || | |||| |||||||||| ||||    
T  48541396 ggcgagttttagcatgggttaattgtcaaattgctccatattagatcaattttgttttatttattattagttgtccaccttgcatttttatattttaatt 48541495  T
Q  285 tata 288  Q
    ||||    
T  48541496 tata 48541499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 11322437 - 11322347
Alignment:
Q  12 gctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaac 102  Q
    |||| ||| |||| ||||||||||| |||||||| | | ||||||||||| ||||  |||| ||| ||||||||||||| || ||||||||    
T  11322437 gctatatctaactagattaaactaataatatatgatgatatgcttgcaatgtagtatgctagtgacggtggtttataaggtgactagtaac 11322347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 43323536 - 43323590
Alignment:
Q  235 ttttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 289  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||||| |||||    
T  43323536 ttttgttttatttgctattacatttacaccctgcattttatatttcaatctataa 43323590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 43326096 - 43326037
Alignment:
Q  188 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||||||||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||    
T  43326096 cgagttttagcatgggacaattgtcaaactgtcccatcttaaatcaattttgttttattt 43326037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 13648561 - 13648427
Alignment:
Q  201 ggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaat 300  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || || | |||    
T  13648561 ggggcaattgtgaaattgccccatcttagatcaattttgttttatttcctgttacatgtacaccctgcattttatatttcaatttatagccgtacttaat 13648462  T
Q  301 tataatttgactcaaatttacttgtaaatacatta 335  Q
    |||||||||||||||||||||||||| ||||||||    
T  13648461 tataatttgactcaaatttacttgtatatacatta 13648427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 10030611 - 10030479
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
T  10030611 ggcgagttttagcatgggacaattgtgaaattgccccatcttagatcaattttgttttatttgatgttacatgtacaccctgcattttatattctaattt 10030512  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    ||| ||||| |||||||||||||||||||||||    
T  10030511 atagccctactcaattataatttgactcaaatt 10030479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 51800951 - 51801105
Alignment:
Q  186 ggcgagttttagcatggggcaa-ttgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 284  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  51800951 ggcgagttttagcatgaggcaaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatatttcaatt 51801050  T
Q  285 tataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 335  Q
    |||| || |||| |||||||||||||||||||||    ||||||| |||||||||    
T  51801051 tatagccttatttaattataatttgactcaaattaatttacttgttaatacatta 51801105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 27042985 - 27043137
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  27042985 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatactccaattt 27043084  T
Q  286 ataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 335  Q
    ||| ||||| |||||| ||||||||||||||||    ||||| |||||||||||    
T  27043085 atagccctactcaatt-taatttgactcaaattaatttacttataaatacatta 27043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 46416033 - 46416186
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    ||||||||||||||||||||||||    |||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  46416033 ggcgagttttagcatggggcaatttcacaattgccccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatattccaattt 46416132  T
Q  286 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  46416133 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 46416186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 10029994 - 10030115
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10029994 ggcgagttttagcatggggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10030093  T
Q  285 tataaccctattcaattataat 306  Q
    || |||| ||||||||||||||    
T  10030094 tacaaccatattcaattataat 10030115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 10257717 - 10257838
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10257717 ggcgagttttagcatgaggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10257816  T
Q  285 tataaccctattcaattataat 306  Q
    ||||||| ||||||||||||||    
T  10257817 tataaccatattcaattataat 10257838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 335
Target Start/End: Complemental strand, 38507909 - 38507781
Alignment:
Q  211 tgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttga 310  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| | | ||||||||||| |||||||||  |||| |||||||||||||||    
T  38507909 tgaaattgccccatcttagatcaattttgttttatttgctgttacatttacaccttacattttatattccaatttatagtcctactcaattataatttga 38507810  T
Q  311 ctca----aatttacttgtaaatacatta 335  Q
    ||||    |||||||||||||||||||||    
T  38507809 ctcaaattaatttacttgtaaatacatta 38507781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 10181347 - 10181468
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    ||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||||||||||| |||  ||||||||||| | ||||||||| |||||    
T  10181347 ggcgagttttagcatggggcagttgtcaaattgctccatcttagatcaattttgttttatttactattagttgtacatcctgaatttttatattccaatt 10181446  T
Q  285 tataaccctattcaattataat 306  Q
    ||||||  |||||| |||||||    
T  10181447 tataacaatattcatttataat 10181468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 10124915 - 10125036
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||| |||| |||||||||| |||||  ||||| ||||||||||||| |||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10124915 ggcgagttttggcattgggcaattgtcaaattgtcctattttagatcaattttattttatttgctattagttgtacatcctgaatttttatattccaatt 10125014  T
Q  285 tataaccctattcaattataat 306  Q
    ||||||| ||||||||||||||    
T  10125015 tataaccatattcaattataat 10125036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 51801550 - 51801429
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||  | |||  ||||||| ||||| ||||| ||| |||||    
T  51801550 ggcgagttttagcatgggacaattgtcaaattactcaatcttagatcaattttgttttatttgttattaattgtacattctgcatttttacattccaatt 51801451  T
Q  285 tataaccctattcaattataat 306  Q
    |||| || |||||| |||||||    
T  51801450 tatagccatattcatttataat 51801429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 13647689 - 13647750
Alignment:
Q  185 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatt 246  Q
    |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  13647689 gggcgagttttaacatggggcaattgtcaaattgccccatcttagatcaattttgttttatt 13647750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 33464155 - 33464269
Alignment:
Q  193 tttagcatgggg-caattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 291  Q
    |||||||||||| |||| || ||||| ||| |||||| |||||||||||||||||| || |||  |||||||||| |||||||||||  |||||||| |     
T  33464155 tttagcatgggggcaatcgttaaattgccccatcttaaatcaattttgttttatttgctattagttgtacatcctacattttatattctaatttatacct 33464254  T
Q  292 ctattcaattataat 306  Q
     |||| |||||||||    
T  33464255 ttatttaattataat 33464269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 38506981 - 38507084
Alignment:
Q  185 gggcgagttttagcatggggcaattgtga-aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaa 282  Q
    ||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||| || |||  ||| || |||||| ||||||||| |||    
T  38506981 gggcgagttttagcatggggcaatt-tgacaattgccccatctaagatcaattttgttttatttgctattagttgtccaccctgcatttttatattccaa 38507079  T
Q  283 tttat 287  Q
    |||||    
T  38507080 tttat 38507084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 27043971 - 27043912
Alignment:
Q  188 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||| ||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  27043971 cgagatttagtatggggtaattgtcaaattgccctatcttagatcaattttgttttattt 27043912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 33465014 - 33464956
Alignment:
Q  189 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||||||    
T  33465014 gagttttagcatggggcaattgtcaaattgccccaacttagatcaattttattttattt 33464956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 34266839 - 34266893
Alignment:
Q  190 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    ||||||||||||||  |||||| ||||| ||| ||||||||||||||||||||||    
T  34266839 agttttagcatgggcaaattgtcaaatttccccatcttagatcaattttgtttta 34266893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 46961727 - 46961671
Alignment:
Q  188 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    ||||||||||||||||  |||||| |||||  || |||||||||||||||| |||||    
T  46961727 cgagttttagcatgggtgaattgtcaaattttcccatcttagatcaattttatttta 46961671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 43139149 - 43139281
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  43139149 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaattt 43139248  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    ||| || || ||||||||||||||| |||||||    
T  43139249 atagccatactcaattataatttgattcaaatt 43139281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 21571042 - 21570910
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  ||||| ||||||| |||| ||||||||||| |||||    
T  21571042 ggcgagttttagcatggggcatttgtgaaattgccctattttagatcaattttgttttatttgttgttatatgtacaccctgtattttatattttaattt 21570943  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    |||  |||| |||||||||||||||||||||||    
T  21570942 atagtcctactcaattataatttgactcaaatt 21570910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 21570416 - 21570537
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
T  21570416 ggcgagttttagtatggggcaattgtcaaattgcccaatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 21570515  T
Q  285 tataaccctattcaattataat 306  Q
    ||||||| |||| | |||||||    
T  21570516 tataaccatatttatttataat 21570537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 42840446 - 42840504
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    ||||||||||||||||||  |||||| ||||| | | ||||||||||||||||||||||    
T  42840446 ggcgagttttagcatgggcaaattgtcaaatttctccatcttagatcaattttgtttta 42840504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 45376267 - 45376207
Alignment:
Q  184 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 244  Q
    |||||||||||||| |||||  |||| | ||||| ||| ||||||||||||||||||||||    
T  45376267 agggcgagttttagtatgggcaaattatcaaatttccccatcttagatcaattttgtttta 45376207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 7475025 - 7475157
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||| | || ||||||||||  |||||    
T  7475025 ggcgagttttagcatggggcaattatgaaattaccccatcttagattaattttgttttatttgctgttacatatacaccatgtattttatattctaattt 7475124  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    ||||||||||| |||||||||||||||||||||    
T  7475125 ataaccctatttaattataatttgactcaaatt 7475157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 28870467 - 28870317
Alignment:
Q  189 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 288  Q
    |||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  28870467 gagttttagcatggggtaattgtgaaattgctccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 28870368  T
Q  289 accctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
T  28870367 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 28870317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 47514484 - 47514338
Alignment:
Q  185 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 284  Q
    ||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||    
T  47514484 gggcgagttttagcatggggcaattg--------ccccatcttagatcaattttgttttatttgctgttacatgtacaccctgcattttatattctaatt 47514393  T
Q  285 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
    ||||  | || |||||| ||||||||||||    |||||||||||||||||||||    
T  47514392 tatagtcatactcaattgtaatttgactcaaattaatttacttgtaaatacatta 47514338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 28869836 - 28869961
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 280  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||    ||||  |||||||| |||| ||||||||| |    
T  28869836 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttaattgtacatcttgcatttttatattcc 28869935  T
Q  281 aatttataaccctattcaattataat 306  Q
    |||||||| || |||||| |||||||    
T  28869936 aatttatagccatattcatttataat 28869961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 47513543 - 47513664
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||| |||||||||    
T  47513543 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttacatttcaatt 47513642  T
Q  285 tataaccctattcaattataat 306  Q
    |||| || |||| | |||||||    
T  47513643 tatagccatatttatttataat 47513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 44185862 - 44185801
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||||||||||||||||||||||||| |||||  || |||||||||||||||| ||||||||    
T  44185862 ggcgagttttagcatggggcaattgtcaaattgtcccatcttagatcaattttattttattt 44185801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 38826027 - 38825873
Alignment:
Q  185 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 284  Q
    ||||||||||| ||||||||| ||||||||||| |   ||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  38826027 gggcgagtttttgcatggggcgattgtgaaattgcttcatcttagataaattttgttttatttgatgttacatgtacaccctgcattttatatttcaatt 38825928  T
Q  285 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 335  Q
    |||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  38825927 tatagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 38825873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 40133796 - 40133670
Alignment:
Q  192 ttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 291  Q
    |||||||| |||||| |||||||||| ||| |||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||| ||    
T  40133796 ttttagcacggggcagttgtgaaattgccccatcttaaatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaatttatagcc 40133697  T
Q  292 ctattcaattataatttgactcaaatt 318  Q
    ||| ||||||||||||||| |||||||    
T  40133696 ctactcaattataatttgattcaaatt 40133670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 1156131 - 1156253
Alignment:
Q  185 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcct-gcattttatatttcaat 283  Q
    ||||| ||||||||||||||||||||| |||||   | |||||| |||||||||||||||||| || |||  ||||||| ||   |||||||||||||||    
T  1156131 gggcgggttttagcatggggcaattgttaaattgttccatcttaaatcaattttgttttatttgctattaattgtacattctataattttatatttcaat 1156230  T
Q  284 ttataaccctattcaattataat 306  Q
    ||||| | ||||| |||||||||    
T  1156231 ttatagctctatttaattataat 1156253  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 1157004 - 1156930
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 260  Q
    |||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||| || |||| ||||    
T  1157004 ggcgagttttagcatgggacaattgtgaaattatcccaacttagatcaattttgttttatttgctattacttgta 1156930  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 2283628 - 2283702
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 260  Q
    ||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||| || |||| ||||    
T  2283628 ggcgagttttagcatggagcaattgtgaaattgccccaacttagatcaattttgttttatttgctattacttgta 2283702  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 2285641 - 2285557
Alignment:
Q  223 atcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataaccctattcaattataat 306  Q
    |||||| |||||||||||||||||| || |||  |||||||||| || ||||||||||||||||||| | ||||| |||||||||    
T  2285641 atcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatatttcaatttatagctctatttaattataat 2285557  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 40129171 - 40129232
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||| |||||||||||||| |||||| ||||| | | |||||||||||||||| ||||||||    
T  40129171 ggcgtgttttagcatggggtaattgtcaaattgctccatcttagatcaattttcttttattt 40129232  T

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Target: scaffold0022 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 60473 - 60341
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||| || ||||||||||| | || ||||||||||  |||||    
T  60473 ggcgagttttagcatggggcaattgtcaaattgctccatcttagatcaattttgttttatttgctattacatgtacaccttgtattttatattctaattt 60374  T
Q  286 ataaccctattcaattataatttgactcaaatt 318  Q
    |||  |||| |||||||||||||||||||||||    
T  60373 atagtcctactcaattataatttgactcaaatt 60341  T

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Target: scaffold0072 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 16237 - 16357
Alignment:
Q  186 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 285  Q
    |||| |||||||||| || ||||||| |||||   | ||||||||||||||||||||||||| ||  ||  |||||||||| ||||||||||||||||||    
T  16237 ggcgggttttagcataggacaattgttaaattggtccatcttagatcaattttgttttatttgctactagctgtacatcctacattttatatttcaattt 16336  T
Q  286 ataaccctattcaattataat 306  Q
    ||| | ||||| |||||||||    
T  16337 atagctctatttaattataat 16357  T

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Target: scaffold0072; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 17104 - 17041
Alignment:
Q  184 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 247  Q
    |||| ||||||||||||||| ||||||||||||| ||  | |||||||||||||||||||||||    
T  17104 agggtgagttttagcatgggacaattgtgaaattgcctcaacttagatcaattttgttttattt 17041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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