View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_high_9 (Length: 307)
Name: NF4746_high_9
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 2580013 - 2579733
Alignment:
| Q |
11 |
gagaagaaagtgacccgtcaaacaagaaagctagagagattgccaagtgaagaagatatcaatgctagtgctgatgccttcattaagaactttaggcagc |
110 |
Q |
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| T |
2580013 |
gagaagaaagtgacccgtcaaacaagaaagctagagagattgccaagtgaagaagatatcaatgctagtgctgatgccttcattaagaactttaggcagc |
2579914 |
T |
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| Q |
111 |
agcttatgcttcagaggcttcaatctattgagaattatgagaaaatgcttgctaggggacggtagcttatgatattgatatatatttcaagtattttaag |
210 |
Q |
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| T |
2579913 |
agcttatgcttcagaggcttcaatctattgagaattatgagaaaatgcttgctaggggacggtagcttatgatattgatatatatttcaagtattttaag |
2579814 |
T |
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| Q |
211 |
ttaatttaattatgtagtaaagttatgaatttcattcctttgtgtcttgttggatatagtaaagtttaaactattcctatg |
291 |
Q |
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| T |
2579813 |
ttaatttaattatgtagtaaagttatgaatttcattcctttgtgtcttgttggatatagcaaagtttaaactattcctatg |
2579733 |
T |
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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 44535219 - 44535326
Alignment:
| Q |
61 |
agaagatatcaatgctagtgctgatgccttcattaagaactttaggcagcagcttatgcttcagaggcttcaatctattgagaattatgagaaaatgctt |
160 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||| || ||| | || || || |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
44535219 |
agaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgattcaaaggcttcaatccattgagaattatgagaaaatgctt |
44535318 |
T |
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| Q |
161 |
gctagggg |
168 |
Q |
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| T |
44535319 |
gcaagggg |
44535326 |
T |
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