View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_low_13 (Length: 251)
Name: NF4746_low_13
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14653146 - 14653385
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14653146 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtctg |
14653245 |
T |
|
| Q |
101 |
ttaacaagcttgttactgatccaaaaaggtctaaggatcctgttcaatttttgtgcaggctcttggatgatctcaccatgctcgggaggcttacttcaat |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||| |
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| T |
14653246 |
ttaacaagcttgttactgatccaaaaagggttaaggatcctgttcaatttttgtggaggctcttggatgatctcaacatgatcgggaggcttgcttcaac |
14653345 |
T |
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| Q |
201 |
ccatataaagattttcttagtctcaaaacttggccttcat |
240 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |
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| T |
14653346 |
ccatataaagattttcttagtttcaaaacttggccttcat |
14653385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 14661581 - 14661750
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||||||||| |
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| T |
14661581 |
aaatatgaagatttggaaagaatgtataacttgttccgtcgtgttcctgatggtctcttaaaaatacaagaagcgatgatctcacacattcgagtgtccg |
14661680 |
T |
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| Q |
101 |
ttaacaagcttgttactgatccaaaaaggtctaaggatcctgttcaatttttgtgcaggctcttggatga |
170 |
Q |
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| T |
14661681 |
ttgacaagcttgttactgatccaaagaggttggaggatcctgttgaatttttgcagaggctcttggatga |
14661750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14757837 - 14757772
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaata |
66 |
Q |
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|||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| |||||| |
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| T |
14757837 |
aaatatgaagatttgggaagaatgtataacttgtttcgtcgtgttactaatggtctctcgaaaata |
14757772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 14749918 - 14749831
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacaca |
88 |
Q |
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|||||| | ||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||| ||||||| |
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| T |
14749918 |
aaatataacgatttgggtagaatgtataacttgttccatcgtgttcctgatggtctcttgaaaatacgtgaagtgatgacttcacaca |
14749831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17690606 - 17690367
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17690606 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagacgtgatgatctcacacattcgagtgtccg |
17690507 |
T |
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| Q |
101 |
ttaacaagcttgttactgatccaaaaaggtctaaggatcctgttcaatttttgtgcaggctcttggatgatctcaccatgctcgggaggcttacttcaat |
200 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
17690506 |
ttaacaagcttgttattgatccaaaaaggttgaaggatcctgttcaatttttgtggaggctcttggatgatctcaccatgctcaggaggcttgcttcaac |
17690407 |
T |
|
| Q |
201 |
ccatataaagattttcttagtctcaaaacttggccttcat |
240 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
17690406 |
ccatataaagattttcttagtcttaaaacttggccttcat |
17690367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 17683680 - 17683511
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
17683680 |
aaatatgaagatttggaaagaatgtataacttgttccgtcgggttcctgatggtctctcaaaaatacaagaagcgatgatctcacacattcgagtgtccg |
17683581 |
T |
|
| Q |
101 |
ttaacaagcttgttactgatccaaaaaggtctaaggatcctgttcaatttttgtgcaggctcttggatga |
170 |
Q |
| |
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|| |||||||||||||||||||||| |||| ||||||||||| |||||||| ||||| |||||||| |
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| T |
17683580 |
ttgacaagcttgttactgatccaaagaggttggaggatcctgttgaatttttgcagaggctattggatga |
17683511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17570698 - 17570763
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaata |
66 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| |||||| |
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| T |
17570698 |
aaatatgaagatttgggaagaatgtataacttgtttcgtcgtgttactaatggtctctcgaaaata |
17570763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17621886 - 17621824
Alignment:
| Q |
1 |
aaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaa |
63 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||||| ||| ||||| |||| |
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| T |
17621886 |
aaatatgaagacttgggtagaatgtataacttgttccgtcgtgttcctgatgttctctaaaaa |
17621824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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