View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_low_14 (Length: 242)
Name: NF4746_low_14
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 574126 - 574344
Alignment:
| Q |
2 |
aaagcataaatgaaattgttacaattctgctgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcattt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
574126 |
aaagcataaatgaaattgttacaattctgctgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcattt |
574225 |
T |
|
| Q |
102 |
ttggtataaatataatacaannnnnnnnnnnnnatgagcaatgattgggaaaaacactaagaaaccaaggtagctgaacaaaaattcaggatctgaaaaa |
201 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
574226 |
ttggtataaatataatacaa----tttttttttatgagcaatggatgggaaaaacactaagaaaccaaggtagctaaacaaaaattcaggatctgaaaaa |
574321 |
T |
|
| Q |
202 |
gaggaagatggtagggactaggt |
224 |
Q |
| |
|
|||| |||||||||||||||||| |
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| T |
574322 |
gagggagatggtagggactaggt |
574344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 2471824 - 2471925
Alignment:
| Q |
2 |
aaagcataaatgaaattgttacaattctgctgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcattt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2471824 |
aaagcataaatgaaattgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatgagcgtgtcgtgatgtttagcattt |
2471922 |
T |
|
| Q |
102 |
ttg |
104 |
Q |
| |
|
||| |
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|
| T |
2471923 |
ttg |
2471925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 8981082 - 8980981
Alignment:
| Q |
2 |
aaagcataaatgaaattgttacaattctgctgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcattt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8981082 |
aaagcataaatgaaattgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatgagcgtgtcgtgatgtttagcattt |
8980984 |
T |
|
| Q |
102 |
ttg |
104 |
Q |
| |
|
||| |
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|
| T |
8980983 |
ttg |
8980981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 27135023 - 27135124
Alignment:
| Q |
2 |
aaagcataaatgaaattgttacaattctgctgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcattt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
27135023 |
aaagcataaatgaaattgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatgagcgtgtcgtgatgtttagcattt |
27135121 |
T |
|
| Q |
102 |
ttg |
104 |
Q |
| |
|
||| |
|
|
| T |
27135122 |
ttg |
27135124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 49245176 - 49245261
Alignment:
| Q |
135 |
atgagcaatgattgggaaaaacactaagaaaccaaggtagctgaacaaaaattcaggatctgaaaaagaggaagatggtagggacta |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
49245176 |
atgagcaatggatgggaaaaacactaagaaaccaaggtagttaaacaaaaattca-gatctgaaaaagagggagatggtagggacta |
49245261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 23268291 - 23268249
Alignment:
| Q |
2 |
aaagcataaatgaaattgttacaattctgctgtcatgaaagat |
44 |
Q |
| |
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||||||| |||||||||||||||||| || ||||||||||||| |
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| T |
23268291 |
aaagcatgaatgaaattgttacaattatgttgtcatgaaagat |
23268249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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