View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_low_18 (Length: 201)
Name: NF4746_low_18
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 20399179 - 20399107
Alignment:
| Q |
113 |
tttgttttaaagattggagagggttgagtgatatataggagagacaaaatgaagatacatggaatggagaata |
185 |
Q |
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| T |
20399179 |
tttgttttaaagattggagagggttgagtgatatataggagagaaaaaatgaagatacatggaatggagaata |
20399107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 20390086 - 20390018
Alignment:
| Q |
117 |
ttttaaagattggagagggttgagtgatatataggagagacaaaatgaagatacatggaatggagaata |
185 |
Q |
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| T |
20390086 |
ttttaaagattggagagagttgggtgatatataggagagaaaaaatgaagatgcatggaatggagaata |
20390018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20399293 - 20399245
Alignment:
| Q |
1 |
caagcagtttcccatttttggttttgcaattgagtgttgtttttctact |
49 |
Q |
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| T |
20399293 |
caagcagtttcccatttttggttttgcaattgagtgttgtttttctact |
20399245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 20413119 - 20413051
Alignment:
| Q |
117 |
ttttaaagattggagagggttgagtgatatataggagagac-aaaatgaagatacatggaatggagaat |
184 |
Q |
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|||||||||||| |||| |||| |||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
20413119 |
ttttaaagattgaagagagttgggtgatatataggagagacaaaaatgaagatgcatggaatggagaat |
20413051 |
T |
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