View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_low_3 (Length: 382)
Name: NF4746_low_3
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 4 - 377
Target Start/End: Complemental strand, 27723874 - 27723503
Alignment:
| Q |
4 |
tgaacttcagtgcatttgtttatgctttctgagcactacatttgttacatgtaattattcatgcttgtagaattctagagttatcttacaaatactagca |
103 |
Q |
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| T |
27723874 |
tgaacttcagtacatttgtttatgctttctgagcactacatttgttacatgtaattattcatgcttatagaattctagagttatcttacaaatactagca |
27723775 |
T |
|
| Q |
104 |
agatgcaaaatgtaaactaagtactcaagattccataaaacgacaattggtagtagattacatttttctaagtaatctcatactccaaagatattgtaca |
203 |
Q |
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| T |
27723774 |
agatgcaaaatgtaaactaagtactcaagattccatacaacgacaattggtagtagattacatttttctaagtaatctcatactccaaagatattgtaca |
27723675 |
T |
|
| Q |
204 |
aatttcttttttgaactaggatattgaacaaattttgaaaatcaaacgactcatttataataagaaatattgtgttgaatgagaaggtataaaatatttg |
303 |
Q |
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| T |
27723674 |
aattttttttttgaactaggatattgaacaaattttgaaaatcaaacgactcatttataataagaaatattgtgttgaatgagaaggtatacaatatttg |
27723575 |
T |
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| Q |
304 |
ttaaaagaaaccatcaagatccttattggaaatccttatcgtaatctctctctcgctctttatctgtccctttg |
377 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
27723574 |
ttaaaagaaaccatcaagatccttcttggaaatccttatcgtaatct--ctcttgctctttatctgtccctttg |
27723503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 237 - 355
Target Start/End: Complemental strand, 14681345 - 14681227
Alignment:
| Q |
237 |
tttgaaaatcaaacgactcatttataataagaaatattgtgttgaatgagaaggtataaaatatttgttaaaagaaaccatcaagatccttattggaaat |
336 |
Q |
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| T |
14681345 |
tttgaaaatcaaacaattcattaaaaataagaaatattatgttgagtgagaaggcataaaatatttgttaaaagaaaccatcaagatccttattggaaat |
14681246 |
T |
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| Q |
337 |
ccttatcgtaatctctctc |
355 |
Q |
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||||||||||||||||||| |
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| T |
14681245 |
ccttatcgtaatctctctc |
14681227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 9487217 - 9487100
Alignment:
| Q |
236 |
ttttgaaaatcaaacgactcatttataataagaaatattgtgttgaatgagaaggtataaaatatttgttaaaagaaaccatcaagatccttattggaaa |
335 |
Q |
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| T |
9487217 |
ttttgaaaatcaaacgacttatttaaaataagaaatattatgttgaaggagaagatataaaatatttgttaaaagaaaccatcaaaatcc--catggaaa |
9487120 |
T |
|
| Q |
336 |
tccttatcgtaatctctctc |
355 |
Q |
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|||||||||||||||||||| |
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| T |
9487119 |
tccttatcgtaatctctctc |
9487100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 14681480 - 14681349
Alignment:
| Q |
73 |
gaattctagagttatcttacaaatactagcaagatgcaaaatgtaaactaagtactcaa-gattccataaaacgacaattggtagtagattacatttttc |
171 |
Q |
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||||| |||||||||| | |||||||| |||||| |||||||||||| |||||||||| |||||||| ||||||||| |||| |||||||| |||||| |
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| T |
14681480 |
gaattttagagttatcatgcaaatactgacaagatccaaaatgtaaaccaagtactcaaagattccatcgaacgacaatcggtactagattacgtttttc |
14681381 |
T |
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| Q |
172 |
taagtaatctcatactccaaagatattgtaca |
203 |
Q |
| |
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||||||||||| ||||||||| || ||||||| |
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| T |
14681380 |
taagtaatctcttactccaaacatcttgtaca |
14681349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 9487343 - 9487222
Alignment:
| Q |
79 |
tagagttatcttacaaatactagcaagatgcaaaatgtaaactaagtactcaagattccataaaacgacaattggtagtagattacatttttctaagtaa |
178 |
Q |
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|||||||||| | ||||||| ||| ||||||||||||||| |||||| | |||||||| |||| ||| | | |||||||||||||||| |||||||| |
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| T |
9487343 |
tagagttatcatgcaaataccgacaatatgcaaaatgtaaacaaagtaccgatgattccatcaaaccacagtcg-tagtagattacattttgctaagtaa |
9487245 |
T |
|
| Q |
179 |
tctcatactccaaagatattgta |
201 |
Q |
| |
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|||||||||||||| || ||||| |
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| T |
9487244 |
tctcatactccaaacatcttgta |
9487222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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