View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_low_5 (Length: 314)
Name: NF4746_low_5
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 87 - 314
Target Start/End: Original strand, 42249884 - 42250123
Alignment:
| Q |
87 |
cgatcccagggtcagtatcaataataagcttctccgccttatgaagaacagctttgacgccaccgttaccgttgttgactaaaccgttcatgattatcaa |
186 |
Q |
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| T |
42249884 |
cgatcccagggtcagtatcaataataagcttctccgccttatcaagaacagctttgacgccaccgttaccgttgttgactaaaccgttcatgattatcaa |
42249983 |
T |
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| Q |
187 |
aaattgaattgaatcgaaacgcaaa-ggtgaagg-----------aaaatgcgaaggaagatatataagaagggttgaaagattatgcgtgtatgtatgt |
274 |
Q |
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| T |
42249984 |
aaattgaattgaatcgaaacgcaaatagctaaggattcaacaaaaaaaatgcggagaaagatatataagaagggttgaaagattatgcgtgtatgtatgt |
42250083 |
T |
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| Q |
275 |
atttatgtatgtgtgattgaagatgaatacatacatacac |
314 |
Q |
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| T |
42250084 |
atttatgtatgtgtgattgaagatgaatacatacatacac |
42250123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 42250124 - 42250152
Alignment:
| Q |
205 |
acgcaaaggtgaaggaaaatgcgaaggaa |
233 |
Q |
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| T |
42250124 |
acgcaaaggtgaaggaaaatgcgaaggaa |
42250152 |
T |
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