View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4746_low_6 (Length: 312)
Name: NF4746_low_6
Description: NF4746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4746_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 923737 - 923592
Alignment:
| Q |
120 |
tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag |
219 |
Q |
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| T |
923737 |
tgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaaatctaaaaagacaccatttttcaatccaaactctt-aaagaag |
923639 |
T |
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| Q |
220 |
aaaaacatatgattagagacacactttaaattaatagttattgaaacata |
269 |
Q |
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| T |
923638 |
aaaaacatatgattagagacacactttaa---aatagtgattgaaacata |
923592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 22996495 - 22996457
Alignment:
| Q |
11 |
tgtaagttattaataatgaataaatccaaataacttatt |
49 |
Q |
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| T |
22996495 |
tgtaagttattaataatgaataaatccaaataacttatt |
22996457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 277
Target Start/End: Original strand, 27540883 - 27541035
Alignment:
| Q |
120 |
tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag |
219 |
Q |
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| T |
27540883 |
tgcattcatttataagctataa-aagacaccatttttctatctaaactcttaaagaactataaaacgacactatttttcaatcaaaattctt-aaagaag |
27540980 |
T |
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| Q |
220 |
aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattga |
277 |
Q |
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| T |
27540981 |
aaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattga |
27541035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 294
Target Start/End: Original strand, 46833160 - 46833316
Alignment:
| Q |
120 |
tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag |
219 |
Q |
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||||||||||| |||||||||| |||||||||||||| |||||||||||| ||| | ||||||||| |||||| || ||||||| |||| |
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| T |
46833160 |
tgcattcatttttaaactctaaaaagacaccatttttttatctaaactctaaaaaga-----------caccatttt-caatcgaaactcttaaa-gaag |
46833246 |
T |
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| Q |
220 |
aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattgatacattagttttatgac |
294 |
Q |
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| T |
46833247 |
aaaaacacatgattagagacac--tttaaaataatg---attgaaacatagttattgatacattagttttatgac |
46833316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 45032186 - 45032127
Alignment:
| Q |
117 |
agttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa |
176 |
Q |
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| T |
45032186 |
agttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa |
45032127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 4357264 - 4357204
Alignment:
| Q |
115 |
tcagttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa |
176 |
Q |
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|||| |||||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||| |
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| T |
4357264 |
tcagctgcattcatttccaaactctta-aagacacattttttatatctaaactcttaaagaa |
4357204 |
T |
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