View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4747-Insertion-1 (Length: 900)
Name: NF4747-Insertion-1
Description: NF4747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4747-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 672; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 8 - 761
Target Start/End: Original strand, 55562120 - 55562862
Alignment:
| Q |
8 |
ctgatatcaaaatctgactttaaaatcgaatgtttgttgcaataaacagctcatttctgtgggacaggcagggtatgatctcaactcagatatcctgaaa |
107 |
Q |
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| T |
55562120 |
ctgatatcaaaatctgactttaaaatcgaatgtttgttgcaataaacagctcatttctgtgggacaggcagggtatgatctcaactcagatatcctgaaa |
55562219 |
T |
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| Q |
108 |
actcagagtaagtttgctgattaatgcgttttattttatggtattgtgtccttatatgtttgcattacataagtcatcctcgagagaggttgagggtgat |
207 |
Q |
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| T |
55562220 |
actcagagtaagtttgct------tgcgttttattttaagatattgtgtccttatatgtttgcattacataagtcatcctcgagagaggttgagggtgat |
55562313 |
T |
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| Q |
208 |
ggattcgccggtgttggttgcttccactgcgatgggggagccggtctaaggggaggtacctgcagaagtcacttcgatgccaaagtcataatattatagt |
307 |
Q |
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| T |
55562314 |
ggattcgccggtgttggttgcttccactgcgatgggggagccggtctaaggggaggtacctgcagaagtcacttcgatgccaaagtcataatattatagt |
55562413 |
T |
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| Q |
308 |
agcaaagtagagggattagagatacctcaaatagggttcggtacacctgttatgacttggtcagtgattctagtcctgtcctgttacgaacatccatcct |
407 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55562414 |
agtgaagtagagggattagagatacctcaaatagggttcggtacacctgttatgacttggtcagtgattctagtcctgtcctgttacgaatatccatcct |
55562513 |
T |
|
| Q |
408 |
gtcatggaaaggacgatgaagtgaggtctcgtgtaatgacctctttatctgttgaatgtaaatcatttggcatgatgctggctactcaatgtgtagctat |
507 |
Q |
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| T |
55562514 |
gtcatggaaaggacgatgaagtgaggtctcgtgtaatgacctctttatctgttgaatgtaaatcatttggcatgatgctggctactcaatgtgtagctat |
55562613 |
T |
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| Q |
508 |
gatgcttaatttatggataccaataagagaaagttcattaatgtttaatttccttggtattaatgttatacatttaaatttcaaggaaatattgaaacaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55562614 |
gatgcttaatttatggataccaataagagaaagttcattaatgtttaatttccttggtattaatgttatacatttaaatttcaagg-aatattgaaacaa |
55562712 |
T |
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| Q |
608 |
caaacaaacctgagaaaaatctactcgtcttaataattgcagaaatggctaacctagtaaacttcatgaactacctatacagggagggtggttgggtctc |
707 |
Q |
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| T |
55562713 |
caaacaaacctgag-aaaatctactcgtcttaataattgcagaaatggctaacctagtaaac-tcatgaactacctatacagggagggtg--ttggtctc |
55562808 |
T |
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| Q |
708 |
gatatgcatactgatgctatatgtaataccaatatattatctgttgtgttgaaa |
761 |
Q |
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| T |
55562809 |
gatatgcatactgatgctatatgtaataccaatatattatctgttgtgttgaaa |
55562862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 767 - 900
Target Start/End: Original strand, 55563164 - 55563295
Alignment:
| Q |
767 |
aatatactatctgttgtatttaaagagactgaatttcccctccagtctaacttaattttttcctttgctcttagcgtttgtgctatttattcgtttcatt |
866 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
55563164 |
aatatactatctgttgtatttaaagagactgaatttccc-tccagtctaacttaattttttcttttgctcttagcgtttgtgctatttattcgtttcaat |
55563262 |
T |
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| Q |
867 |
gtatttaatcgcccctaatttctaattatttcag |
900 |
Q |
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| T |
55563263 |
gtatttaatcgcccct-atttctatttatttcag |
55563295 |
T |
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